CN181487

Overview
NameCN181487
Unique NameCN181487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:40..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181487 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 2
Query:  479 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 667
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVK
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVK 69          
BLAST of CN181487 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 61/149 (40.94%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  224 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELK 661
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +    AE+K
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTEYTKEAEIK 501          

HSP 2 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 55/152 (36.18%), Postives = 74/152 (48.68%), Query Frame = 2
Query:  215 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELK 661
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D    AE+K
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTDYTRAAEVK 316          

HSP 3 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 52/148 (35.14%), Postives = 73/148 (49.32%), Query Frame = 2
Query:  227 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELK 661
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D    AE+K
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128          
BLAST of CN181487 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 69/211 (32.70%), Postives = 95/211 (45.02%), Query Frame = 2
Query:  119 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVK 667
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PLG   D ++  ELK+K
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLK 224          
BLAST of CN181487 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 61/171 (35.67%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  230 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPGGS-FDPLGLADDPEAFAELKVK 667
            SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG  F+PLG   D ++  ELK+K
Sbjct:   66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLK 226          
BLAST of CN181487 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 2
Query:  227 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 646
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA 201          
BLAST of CN181487 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 2
Query:  227 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 646
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG  + F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA 200          
The following BLAST results are available for this feature:
BLAST of CN181487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB21_EUGGR7.164e-1769.70Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
LH18_EUGGR3.010e-1540.94Light-harvesting complex I LH38 proteins (Fragment... [more]
CB13_SOLLC4.068e-1232.70Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.184e-1135.67Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH2.637e-1134.72Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA3.444e-1134.72Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181487 ID=CN181487; Name=CN181487; organism=Citrus sinensis; type=EST; length=669bp
GAGGCCAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAA
TGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCA
GGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAG
CAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGT
ACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTC
CCTGGCGACTACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAAC
CTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGT
TGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTC
AAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGA
GGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCA
TCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGT
TACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCC
AGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTG
CTGAGCTCAAGGTTAAGGA
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