CN181486

Overview
NameCN181486
Unique NameCN181486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:457..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.132e-18
Identity = 58/126 (46.03%), Postives = 72/126 (57.14%), Query Frame = -2
Query:  171 WFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 542
            W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  113 WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = -2
Query:  177 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 542
            W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  165 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.365e-16
Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = -2
Query:  177 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 542
            W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  162 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  174 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 392
            P GEV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP +N
Sbjct:  179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = -2
Query:  201 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 542
            W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F +QA  TGKGP+  LA
Sbjct:  166 WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.728e-12
Identity = 49/127 (38.58%), Postives = 63/127 (49.61%), Query Frame = -2
Query:  183 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 542
            W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  138 WYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 49/127 (38.58%), Postives = 63/127 (49.61%), Query Frame = -2
Query:  183 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 542
            W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  138 WYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  174 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 392
            P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP +N
Sbjct:  178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of CN181486 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = -2
Query:  174 IWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 452
            IW  +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ RLAM S FG+ VQA+ TG+G L +LA   AD +NN
Sbjct:  188 IWI-EVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276          
The following BLAST results are available for this feature:
BLAST of CN181486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB11_SOLLC6.132e-1846.03Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_ARATH5.191e-1744.72Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.365e-1643.90Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH1.013e-1256.16Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4C_ARATH1.323e-1241.88Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB12_SOLLC1.728e-1238.58Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.257e-1238.58Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA2.948e-1253.42Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB29_CHLRE1.463e-1148.45Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181486 ID=CN181486; Name=CN181486; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTTTTTTTTAGATCAATTGAAGCATTTTATAAATAATCACAACTCA
AATTAAAGCTTCCATGAGCTCACAACAGATTTACATGATATCCAAGAAAC
CGAAAAGAGAAAAACTCTTATCAACCGAAGCTCACTTTCCGGGGACAAAG
TTGGTGGCGTAGGCCCAGGCATTGTTATTGACAGGGTCAGCCAAGTGGTC
GGCCAAGTTCTCTAACGGTCCCTTGCCGGTGACAATGGCCTGAACGAAGA
AACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGATTTCCTTAACC
TTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAAACCCAATGGATCAAA
GCTGCCACCTGGGTACAATGGGTCAGTCACTTCACCGAGCGGCCCTCCAG
CAATTCTGTAACCCTCAACGGCTCCCATCAAGACCACCTGGCAAGCCCAG
ATGGCCAAGATGCTCTGGGCGTGGATCAAGCTTGGGTTTCCCAAGTAGTC
AAGCCCGCCCTCGCTGAAGATCTGAGCTCCCGCCTTGAACCACACAGCCT
CACCGAACTTGACTCCG
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