CN181483

Overview
NameCN181483
Unique NameCN181483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5956 contig Csv1_Contig5956:138..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_CAEEL (Proliferating cell nuclear antigen OS=Caenorhabditis elegans GN=pcn-1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDG-SDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            SLQ+MDSSHVALV+L L    F+ YRCDR I++G++L N+SK LKCA NDD   LK ++   D+    F  P +DK  D  +K+MDID EHLGIP  +Y
Sbjct:    2 SLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEENEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDY 100          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_NPVAC (Probable DNA polymerase sliding clamp OS=Autographa californica nuclear polyhedrosis virus GN=PCNA PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.931e-20
Identity = 44/98 (44.90%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            S+Q MD+SHVALV+L L +EGF+ YRCDRN+ + +++N++SK++KC      + +KA+D  D    +F +   ++I  + +KLM ID EHLGIP ++Y
Sbjct:   36 SMQVMDTSHVALVSLQLHAEGFKKYRCDRNVPLNVSINSLSKIVKCVNERSSVLMKAEDQGDVMAFVFNN--DNRICTYTLKLMCIDVEHLGIPDSDY 131          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_YEAST (Proliferating cell nuclear antigen OS=Saccharomyces cerevisiae GN=POL30 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.414e-19
Identity = 42/96 (43.75%), Postives = 66/96 (68.75%), Query Frame = 3
Query:   48 QSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            Q++D S V LV+L +  E F+ YRCD  +++GM+L ++SK+L+C  N D +TL AD+  D+  L+FE   +D+IA++ +KLMDID + L I   +Y
Sbjct:   38 QAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQY 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_PLAFK (Proliferating cell nuclear antigen OS=Plasmodium falciparum (isolate K1 / Thailand) GN=PCNA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.313e-17
Identity = 37/96 (38.54%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   45 LQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAE 332
            LQ++D +HV+LV+L L   GF HYRCDR   +G+N+ +++K+ K  G ++ + + + D  D    +FE+  +DK+ +F +KLM I+ + L IP  E
Sbjct:   37 LQALDGNHVSLVSLHLLDSGFSHYRCDRERVLGVNIASLNKVFKLCGANESVVISSKDDEDNLNFVFENNKEDKVTNFSLKLMSIELDSLNIPDCE 132          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_PLAF7 (Proliferating cell nuclear antigen OS=Plasmodium falciparum (isolate 3D7) GN=PCNA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.313e-17
Identity = 37/96 (38.54%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   45 LQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAE 332
            LQ++D +HV+LV+L L   GF HYRCDR   +G+N+ +++K+ K  G ++ + + + D  D    +FE+  +DK+ +F +KLM I+ + L IP  E
Sbjct:   37 LQALDGNHVSLVSLHLLDSGFSHYRCDRERVLGVNIASLNKVFKLCGANESVVISSKDDEDNLNFVFENNKEDKVTNFSLKLMSIELDSLNIPDCE 132          
The following BLAST results are available for this feature:
BLAST of CN181483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PCNA_CAEEL1.105e-2253.54Proliferating cell nuclear antigen OS=Caenorhabdit... [more]
PCNA_NPVAC3.931e-2044.90Probable DNA polymerase sliding clamp OS=Autograph... [more]
PCNA_YEAST7.414e-1943.75Proliferating cell nuclear antigen OS=Saccharomyce... [more]
PCNA_PLAFK5.313e-1738.54Proliferating cell nuclear antigen OS=Plasmodium f... [more]
PCNA_PLAF75.313e-1738.54Proliferating cell nuclear antigen OS=Plasmodium f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181483 ID=CN181483; Name=CN181483; organism=Citrus sinensis; type=EST; length=341bp
GAGGAACGATGCCAACTTTGACTGCTCGGCCACCGGCTTTCTCTCTTCAA
TCCATGGACTCCAGCCACGTGGCGCTGGTGGCCCTGCTGCTCAGATCGGA
AGGCTTCGAGCACTACCGCTGTGACCGGAATATCTCTATGGGAATGAATC
TCAATAACGTGTCCAAGATGCTTAAGTGTGCTGGCAACGATGACATCATC
ACTCTCAAGGCCGACGACGGCAGCGATACCGCTACTCTCATGTTTGAAAG
TCCCACTCAAGATAAGATTGCTGATTTTGAGATGAAACTGATGGACATTG
ATAGAGAGCATCTTGGTATACCGCATGCTGAATACCATGCC
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