CN181478

Overview
NameCN181478
Unique NameCN181478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2266 contig Csv1_Contig2266:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 2
Query:  233 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFI-ENNRDKAAPKETVKEESG 592
            V VL  ++  ++V +  K+VL+EFYAPWCGHCK LAPI ++VA  ++++ DVVIA  DA       + ++V G+PT+ FF   +     Y G R  +D V FI E +      K  +  E+G
Sbjct:  149 VVVLTPETFNEVVLDGTKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGFPTLKFFPKGNKAGEDYGGGRDLDDFVAFINEKSGTSRDAKGQLTSEAG 270          

HSP 2 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  227 EPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFI 538
            + V VL  ++ +  V +  K  L+EFYAPWCGHCKKLAP  +++  S++    V+IAK D   +      + V GYPT+ +F   S +   +EG RT E + +F+
Sbjct:   29 DDVVVLTEENFEKEVGHD-KGALVEFYAPWCGHCKKLAPEYEKLPNSFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKFEGPRTAESLAEFV 132          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDILT_MACFA (Protein disulfide-isomerase-like protein of the testis OS=Macaca fascicularis GN=PDILT PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 59/190 (31.05%), Postives = 100/190 (52.63%), Query Frame = 2
Query:    2 RISFLL--GDLEASQGAFQYFGLQESQVPLI-VIQTNDGQKYLKPNLDA--DQIAPWVKEYKEGKVPPFRKSEPIPEENNEP-VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR---SASGKTVPYEGDRTKEDIVDFIEN 544
            +I F+L   D   ++   +YF + E  +P + ++  +   +Y  P+ D   + +  + + +        + SE IP+  ++  VK LV  +   +VF+  K+V + FYAPW   CK L P+L+E+   YQN + ++IAK D TANDI      +  YP  FFR   + S + V Y+G+ T +   DF+E+
Sbjct:  306 KILFILVNADEPRNRRVIEYFRVTEVDIPSVQILNLSSDARYKMPSDDITYENLKKFGRSFLSKNAKKHQSSEEIPKHWDQGLVKQLVGKNFNIVVFDKEKDVFVMFYAPWSKKCKMLFPLLEELGRKYQNHSTIIIAKIDITANDI--QLVYLDRYP--FFRLFPTDSQQAVLYKGEHTLKGFSDFLES 491          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: TIGA_ASPNG (Protein disulfide-isomerase tigA OS=Aspergillus niger GN=tigA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  242 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDAD-VVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEES 589
            LV  +  D+V  SGK  L+EF+APWCGHCK LAP+ +E+  ++ + +D V + K DA  +   G  F VQG+PT+ +F   S +   Y+G R  E +  FI + +    P+   KE S
Sbjct:   24 LVPKNFDDVVLKSGKPALVEFFAPWCGHCKNLAPVYEELGQAFAHASDKVTVGKVDADEHRDLGRKFGVQGFPTLKWFDGKSDEPEDYKGGRDLESLSSFI-SEKTGVKPRGPKKEPS 140          

HSP 2 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  101 NDGQKYLKPNLDADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFE--VQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFI 538
            +D  +  K   D + ++ ++ E K G  P   K EP   E       ++ D+          +VL+ F APWCGHCK LAP  + +A  +  + +VVIAK DA A +      E  V GYPT+ FF   S ++VPYEG R+++  +DF+
Sbjct:  105 SDEPEDYKGGRDLESLSSFISE-KTGVKPRGPKKEPSKVE-------MLNDATFKGAVGGDNDVLVAFTAPWCGHCKNLAPTWEALANDFVLEPNVVIAKVDADAENGKATAREQGVSGYPTIKFFPKGSTESVPYEGARSEQAFIDFL 245          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDI2_SCHPO (Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe GN=SPAC17H9.14c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 2
Query:  230 PVKVLVADSLQ--DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVP--YEGDRTKEDIVDFI-ENNRDKAAPKETVKEESGKDEL*EGMGASLLE 634
            P  V+  DSL    +V +  K+VL+EFYA WCG+CK+LAP  + +   ++N+ +V I K +A      G   EV  +PT+ F     K  P  YEGDR+ E ++++I + +  + +P  T+   +G+    +   A  L+
Sbjct:  139 PSNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQRSPDGTLLSTAGRIPTFDEFAAEFLD 278          

HSP 2 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 34/103 (33.01%), Postives = 58/103 (56.31%), Query Frame = 2
Query:  233 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT-VFFRSASGKTVPYEGDRTKEDIVDFI 538
            V++   + L++ +  S K  L+EFYA WCGHCK LAP+ +E+   +++  DV+I K DA  +    D + + G+PT ++F     + V Y   R  + +  F+
Sbjct:   23 VELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLTQFV 125          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  242 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG--DTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFI 538
            L   +   +V +  KNVL+EFYAPWCGHCKKL P  + +  +Y N+ DVVIAK D  A D       + V G+PT+ +F   S     YE  R  +  +++I
Sbjct:  147 LSPSNFDSVVLDKSKNVLVEFYAPWCGHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYI 248          

HSP 2 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  233 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDAD-VVIAKFDATANDIPG--DTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN-----RDKAAPKETV 577
            V VL  D+  D V +  K V ++FYAPWCGHCKKLAP  + +A ++   ++ VVIAK D    D       ++V GYPT+     S     Y G R+ ++++ +I N+     + K AP   V
Sbjct:   24 VVVLSPDNF-DTVVDGSKTVFVKFYAPWCGHCKKLAPDFEILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDKSTTAKDYNGARSVDELLTYINNHAKTNVKVKKAPSNVV 145          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: TMX3_XENLA (Protein disulfide-isomerase TMX3 OS=Xenopus laevis GN=tmx3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  230 PVKVLVADSLQDMVFNSGKNV-LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVV-IAKFDATANDIPGDTFEVQGYPTVFFRSASG-KTVPYEGDRTKEDIVDF 535
            PV  LV D       N   ++ L++FYAPWCGHCKKL P+ +EV +  +     + + K DAT        F V+G+PT+  ++  G     Y G RTKEDIV+F
Sbjct:   23 PVSALVEDLDDSFKENRKDDIWLVDFYAPWCGHCKKLEPVWNEVGIEIRTSGSPIRVGKIDATVYSSIASEFGVRGFPTI--KALKGDMAYNYRGPRTKEDIVEF 125          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: SEP2_EMIHU (Protein disulfide-isomerase-like protein EhSep2 OS=Emiliania huxleyi GN=SEP2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  242 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP-GDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIEN 544
            L  D+  ++V  SGK   ++F APW GHCKK+ P  D +A ++++   V+IA  D T    P  + + V+GYPT+ +F     +   Y+G R+ +++  F EN
Sbjct:   22 LTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAEN 124          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 43/124 (34.68%), Postives = 58/124 (46.77%), Query Frame = 2
Query:  242 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 595
            L  DS    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  165 LTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIISEDIAK 288          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 43/124 (34.68%), Postives = 58/124 (46.77%), Query Frame = 2
Query:  242 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 595
            L  DS    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  165 LTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  293 LLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 535
            L++FYAPWCGHCKKL PI +EV +  ++  + V + K DAT+       F V+GYPT+           Y G RTK+DI++F
Sbjct:   48 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGD-LAYNYRGPRTKDDIIEF 128          
The following BLAST results are available for this feature:
BLAST of CN181478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PDIA6_MEDSA3.570e-1739.34Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDILT_MACFA7.953e-1731.05Protein disulfide-isomerase-like protein of the te... [more]
TIGA_ASPNG1.148e-1538.98Protein disulfide-isomerase tigA OS=Aspergillus ni... [more]
PDI2_SCHPO4.825e-1432.86Protein disulfide-isomerase C17H9.14c OS=Schizosac... [more]
PDI1_DICDI1.833e-1340.20Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
TMX3_XENLA2.395e-1340.00Protein disulfide-isomerase TMX3 OS=Xenopus laevis... [more]
SEP2_EMIHU9.099e-1334.95Protein disulfide-isomerase-like protein EhSep2 OS... [more]
PDIA6_PONAB9.099e-1334.68Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN9.099e-1334.68Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
TMX3_MOUSE1.552e-1243.90Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181478 ID=CN181478; Name=CN181478; organism=Citrus sinensis; type=EST; length=705bp
GAGGATTAGTTTTCTTTTGGGAGACCTTGAGGCTAGTCAAGGTGCCTTCC
AGTACTTTGGGCTACAAGAGAGCCAAGTACCTCTCATCGTCATTCAGACT
AATGATGGGCAGAAGTATTTGAAGCCGAACTTGGATGCCGATCAGATTGC
ACCTTGGGTGAAGGAATACAAGGAAGGCAAGGTTCCCCCATTCAGAAAGT
CTGAGCCTATCCCTGAAGAGAACAACGAGCCTGTGAAAGTGCTTGTTGCT
GACAGCCTTCAGGACATGGTTTTCAACTCTGGAAAAAATGTTTTGCTCGA
GTTTTACGCTCCTTGGTGTGGACACTGCAAAAAGTTGGCTCCAATCTTGG
ATGAAGTTGCTGTCTCATATCAAAACGATGCTGATGTTGTTATTGCAAAA
TTTGATGCAACCGCAAATGATATTCCTGGTGACACTTTTGAAGTCCAAGG
TTACCCAACCGTGTTCTTCCGATCTGCTAGTGGAAAGACAGTGCCCTATG
AGGGGGATAGGACCAAAGAAGATATTGTTGACTTCATTGAAAATAACAGG
GACAAAGCTGCCCCCAAGGAAACTGTAAAAGAGGAATCTGGAAAAGATGA
GCTCTAAGAAGGAATGGGTGCGAGTTTATTAGAGAGCCGTGCACATAGTC
GGTTGGCGCGTGTTTGGCGGATGTTATACCAAAACTATCAGTGTCGACAA
AACAA
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