CN181478

Overview
NameCN181478
Unique NameCN181478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2266 contig Csv1_Contig2266:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  293 LLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 535
            L++FYAPWCGHCKKL PI +EV +  ++  + V + K DAT+       F V+GYPT+           Y G RTK+DI++F
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGD-LAYNYRGPRTKDDIIEF 125          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 43/131 (32.82%), Postives = 61/131 (46.56%), Query Frame = 2
Query:  221 NNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 595
            + + V  L  D+    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  158 SKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 43/131 (32.82%), Postives = 61/131 (46.56%), Query Frame = 2
Query:  221 NNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 595
            + + V  L  D+    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  158 SKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 42/124 (33.87%), Postives = 59/124 (47.58%), Query Frame = 2
Query:  242 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 595
            L  D+    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +  + + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  165 LTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGEAPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDVAK 288          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA5_RAT (Protein disulfide-isomerase A5 OS=Rattus norvegicus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  137 ADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 586
            A+ I  W+K  +    PP  +    P  +       + D   D       +VL+ F+APWCGHCKK+ P  +  A     DA+   V+A  DAT N+   + F +  +PT+ +F++   + VP    RTK+  +++++N      P+ T +E+
Sbjct:  247 AEDIVEWLKNPQ----PPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATINEALAERFHISAFPTLKYFKNGEQQAVP--ALRTKKKFIEWMQNPEAPPPPEPTWEEQ 393          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA5_MOUSE (Protein disulfide-isomerase A5 OS=Mus musculus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  137 ADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 586
            A+ I  W+K      +PP  +    P  +       + D   D       +VL+ F+APWCGHCKK+ P  +  A     DA+   V+A  DAT N+     F +  +PT+ +F++   + VP    RTK+  +++++N      P+ T +E+
Sbjct:  247 AEDIVEWLKN----PLPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATVNEALAGRFHISAFPTLKYFKNGEQQAVP--ALRTKKKFIEWMQNPEAPPPPEPTWEEQ 393          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: TXND5_MOUSE (Thioredoxin domain-containing protein 5 OS=Mus musculus GN=Txndc5 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 47/159 (29.56%), Postives = 79/159 (49.69%), Query Frame = 2
Query:  113 KYLKPNLDADQIAPWVKEY--KEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN-RDKAAPKETVK 580
            KY  P  D + +  W+ +   +E   P      P   E  + +  L A++ +  V  S  N  ++F+APWCGHCK LAP  +++A+  ++   V I K D T +       +V+GYPT+ +     K   Y+G R  E + D++++  +   A  ETV+
Sbjct:  136 KYQGPR-DFETLENWMLQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHV--SQGNHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLESLRDYVQSQLQGSEAAPETVE 291          

HSP 2 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 43/142 (30.28%), Postives = 66/142 (46.48%), Query Frame = 2
Query:  116 YLKPNLDADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA-VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFI 538
            Y++  L   + AP   E  E    P   +EP  ++    V  L   S +D +        ++FYAPWCGHCK LAP  +E++   +   +DV IA+ D TA       + V+GYPT+       K   + G R  + +  F+
Sbjct:  275 YVQSQLQGSEAAPETVEPSEA---PVMAAEPTGDKGT--VLALTEKSFEDTIAQG--ITFVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERNVCSKYSVRGYPTLLLFRGGEKVGEHNGGRDLDSLHSFV 409          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  293 LLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 535
            L++FYAPWCGHCKKL PI +EV +  ++  + V + K DAT+       F V+GYPT+           + G RTK+DI++F
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGD-LAYNHRGPRTKDDIIEF 125          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA6_CAEEL (Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 44/133 (33.08%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  227 EPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEESGKDEL*EGMGA 622
            + V  L   + Q  V NS    ++EFYAPWCGHCK L P   + A + +  A V     D T +   G  + VQG+PT+  F +   K   Y G RT + I D +     KA       + SG      G G+
Sbjct:   24 DDVVELTEANFQSKVINSDDIWIVEFYAPWCGHCKSLVPEYKKAASALKGVAKV--GAVDMTQHQSVGGPYNVQGFPTLKIFGADKKKPTDYNGQRTAQAIADSVLAEAKKAVSARLGGKSSGSSSSGSGSGS 154          
BLAST of CN181478 vs. ExPASy Swiss-Prot
Match: PDIA5_HUMAN (Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  137 ADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 586
            A+ I  W+K  +    PP  +    P  +       + D   D       +VL+ F+APWCGHCKK+ P  ++ A +   +AD   V+A  DAT N    + F +  +PT+ +F++     VP    RTK+  +++++N      P+ T +E+
Sbjct:  249 AEDIVEWLKNPQ----PPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNGEKYAVPVL--RTKKKFLEWMQNPEAPPPPEPTWEEQ 395          
The following BLAST results are available for this feature:
BLAST of CN181478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TMX3_HUMAN1.552e-1243.90Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
PDIA6_RAT1.552e-1232.82Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE1.552e-1232.82Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
PDIA6_MESAU1.552e-1233.87Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
PDIA5_RAT2.648e-1228.76Protein disulfide-isomerase A5 OS=Rattus norvegicu... [more]
PDIA5_MOUSE2.648e-1228.76Protein disulfide-isomerase A5 OS=Mus musculus GN=... [more]
TXND5_MOUSE5.898e-1229.56Thioredoxin domain-containing protein 5 OS=Mus mus... [more]
TMX3_PONAB5.898e-1242.68Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]
PDIA6_CAEEL7.703e-1233.08Probable protein disulfide-isomerase A6 OS=Caenorh... [more]
PDIA5_HUMAN1.006e-1128.76Protein disulfide-isomerase A5 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181478 ID=CN181478; Name=CN181478; organism=Citrus sinensis; type=EST; length=705bp
GAGGATTAGTTTTCTTTTGGGAGACCTTGAGGCTAGTCAAGGTGCCTTCC
AGTACTTTGGGCTACAAGAGAGCCAAGTACCTCTCATCGTCATTCAGACT
AATGATGGGCAGAAGTATTTGAAGCCGAACTTGGATGCCGATCAGATTGC
ACCTTGGGTGAAGGAATACAAGGAAGGCAAGGTTCCCCCATTCAGAAAGT
CTGAGCCTATCCCTGAAGAGAACAACGAGCCTGTGAAAGTGCTTGTTGCT
GACAGCCTTCAGGACATGGTTTTCAACTCTGGAAAAAATGTTTTGCTCGA
GTTTTACGCTCCTTGGTGTGGACACTGCAAAAAGTTGGCTCCAATCTTGG
ATGAAGTTGCTGTCTCATATCAAAACGATGCTGATGTTGTTATTGCAAAA
TTTGATGCAACCGCAAATGATATTCCTGGTGACACTTTTGAAGTCCAAGG
TTACCCAACCGTGTTCTTCCGATCTGCTAGTGGAAAGACAGTGCCCTATG
AGGGGGATAGGACCAAAGAAGATATTGTTGACTTCATTGAAAATAACAGG
GACAAAGCTGCCCCCAAGGAAACTGTAAAAGAGGAATCTGGAAAAGATGA
GCTCTAAGAAGGAATGGGTGCGAGTTTATTAGAGAGCCGTGCACATAGTC
GGTTGGCGCGTGTTTGGCGGATGTTATACCAAAACTATCAGTGTCGACAA
AACAA
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