CN181477

Overview
NameCN181477
Unique NameCN181477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3890 contig Csv1_Contig3890:239..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: GSBP_CHICK (Dolichyl-diphosphooligosaccharide--protein glycotransferase OS=Gallus gallus PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.193e-16
Identity = 42/113 (37.17%), Postives = 70/113 (61.95%), Query Frame = -3
Query:  320 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK--TVPYEGDRTKEDIVDFIEN-------NRDKAAPKETVKEESGKDE 631
            V +EFYAPWCGHCK+LAP+ D +  +Y++D ++VIAK ++TAN++  +  +V  +PT+ F  AS +   + Y G+RT +    F+E+       N D    +E ++ +  +DE
Sbjct:  389 VFIEFYAPWCGHCKQLAPMWDRLGEAYKDDENIVIAKMESTANEV--EAIKVHSFPTLKFFPASAERTVIDYNGERTLDGYKKFLESGGQDGYGNNDDDDLEEALESDMEEDE 499          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA1_RAT (Protein disulfide-isomerase OS=Rattus norvegicus GN=P4hb PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.340e-16
Identity = 40/93 (43.01%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  359 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIENNRDKAA 631
            V +EFYAPWCGHCK+LAPI D++  +Y++  ++VIAK D+TAN++  +  +V  +PT+ FF +++ +TV  Y G+RT +    F+E+     A
Sbjct:  390 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEV--EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGA 480          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA1_PONAB (Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.340e-16
Identity = 40/93 (43.01%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  359 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIENNRDKAA 631
            V +EFYAPWCGHCK+LAPI D++  +Y++  ++VIAK D+TAN++  +  +V  +PT+ FF +++ +TV  Y G+RT +    F+E+     A
Sbjct:  388 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEV--EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGA 478          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA1_HUMAN (Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 9.340e-16
Identity = 40/93 (43.01%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  359 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIENNRDKAA 631
            V +EFYAPWCGHCK+LAPI D++  +Y++  ++VIAK D+TAN++  +  +V  +PT+ FF +++ +TV  Y G+RT +    F+E+     A
Sbjct:  388 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEV--EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGA 478          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA1_BOVIN (Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.340e-16
Identity = 40/93 (43.01%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  359 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIENNRDKAA 631
            V +EFYAPWCGHCK+LAPI D++  +Y++  ++VIAK D+TAN++  +  +V  +PT+ FF +++ +TV  Y G+RT +    F+E+     A
Sbjct:  390 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEV--EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGA 480          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA1_MOUSE (Protein disulfide-isomerase OS=Mus musculus GN=P4hb PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.220e-15
Identity = 39/93 (41.94%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  359 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIENNRDKAA 631
            V +EFYAPWCGHCK+LAPI D++  +Y++  +++IAK D+TAN++  +  +V  +PT+ FF +++ +TV  Y G+RT +    F+E+     A
Sbjct:  390 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIIIAKMDSTANEV--EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGA 480          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA1_MACFU (Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.593e-15
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  359 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIENNRDKAA 631
            V +EFYAPWCGHCK+LAPI D++  +Y++  ++VIAK D+TAN++  +  +V  +PT+ FF ++  +TV  Y G+RT +    F+E+     A
Sbjct:  390 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEV--EAIKVHSFPTLKFFPASVDRTVIDYNGERTLDGFKKFLESGGQDGA 480          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA1_CRIGR (Protein disulfide-isomerase OS=Cricetulus griseus GN=P4HB PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.593e-15
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  359 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIENNRDKAA 631
            V +EFYAPWCGHCK+LAPI D++  +Y++  +++IAK D+TAN++  +  +V  +PT+ FF + + +TV  Y G+RT +    F+E+     A
Sbjct:  390 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIIIAKMDSTANEV--EAVKVHSFPTLKFFPATADRTVIDYNGERTLDGFKKFLESGGQDGA 480          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.718e-15
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = -3
Query:  272 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEESGKDEL*EGMGASLLESRAHS 631
            VL+EFYAPWCGHCK LAP  ++VA  ++ +  VVIA  DA A+   G+ + V G+PT+ FF   +     Y+G R  +D V FI  N      +++  + + K  + E + A + E  A S
Sbjct:  162 VLVEFYAPWCGHCKSLAPTYEKVATVFKQEEGVVIANLDADAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGRDLDDFVSFI--NEKSGTSRDSKGQLTSKAGIVESLDALVKELVAAS 280          

HSP 2 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = -3
Query:  383 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFI 628
            L+EFYAPWCGHCKKLAP  +++  S++    V+IAK D          + V GYPT+ +F   S +   YEG R  E + +++
Sbjct:   44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEQKSVCTKYGVSGYPTIQWFPKGSLEPQKYEGPRNAEALAEYV 126          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDI_YEAST (Protein disulfide-isomerase OS=Saccharomyces cerevisiae GN=PDI1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.549e-15
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = -3
Query:  374 VLLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK--TVPYEGDRTKEDIVDFIENN 631
            VL+ +YAPWCGHCK+LAP   E+A +Y N  +DV+IAK D T ND+ G    ++GYPT+       K  +V Y+G R+ + + DFI+ N
Sbjct:  397 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRG--VVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKEN 483          
The following BLAST results are available for this feature:
BLAST of CN181477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GSBP_CHICK4.193e-1637.17Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
PDIA1_RAT9.340e-1643.01Protein disulfide-isomerase OS=Rattus norvegicus G... [more]
PDIA1_PONAB9.340e-1643.01Protein disulfide-isomerase OS=Pongo abelii GN=P4H... [more]
PDIA1_HUMAN9.340e-1643.01Protein disulfide-isomerase OS=Homo sapiens GN=P4H... [more]
PDIA1_BOVIN9.340e-1643.01Protein disulfide-isomerase OS=Bos taurus GN=P4HB ... [more]
PDIA1_MOUSE1.220e-1541.94Protein disulfide-isomerase OS=Mus musculus GN=P4h... [more]
PDIA1_MACFU1.593e-1543.01Protein disulfide-isomerase OS=Macaca fuscata fusc... [more]
PDIA1_CRIGR1.593e-1541.94Protein disulfide-isomerase OS=Cricetulus griseus ... [more]
PDIA6_ARATH2.718e-1538.02Probable protein disulfide-isomerase A6 OS=Arabido... [more]
PDI_YEAST3.549e-1546.07Protein disulfide-isomerase OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181477 ID=CN181477; Name=CN181477; organism=Citrus sinensis; type=EST; length=633bp
TATCCATTTCGGATTTAACACGCAGTAAGTTACTCCTAGGCGCCGAAAAT
ACTAAAATATCACAACTATGCGAATACCAAAAAGTACTGCAGCTACAAAT
GCCGAAAATGCCTCCCCATTTTATTCACGGGAACAGAACAGATCTGTAAA
GGGAAATGGCCTAAGAAAAAGCTATAAGGGGGGATATAGGACAAGGGGGA
GGAGAACATCAGGCATTGTTTTGTCGACACTGATAGTTTTGGTATAACAT
CCGCCAAACACGCGCCAACCGACTATGTGCACGGCTCTCTAATAAACTCG
CACCCATTCCTTCTTAGAGCTCATCTTTTCCAGATTCCTCTTTTACAGTT
TCCTTGGGGGCAGCTTTGTCCCTGTTATTTTCAATGAAGTCAACAATATC
TTCTTTGGTCCTATCCCCCTCATAGGGCACTGTCTTTCCACTAGCAGATC
GGAAGAACACGGTTGGGTAACCTTGGACTTCAAAAGTGTCACCAGGAATA
TCATTTGCGGTTGCATCAAATTTTGCAATAACAACATCAGCATCGTTTTG
ATATGAGACAGCAACTTCATCCAAGATTGGAGCCAACTTTTTGCAGTGTC
CACACCAAGGAGCGTAAAACTCGAGCAAAACAT
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