CN181477

Overview
NameCN181477
Unique NameCN181477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3890 contig Csv1_Contig3890:239..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDI2_SCHPO (Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe GN=SPAC17H9.14c PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = -3
Query:  287 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVP--YEGDRTKEDIVDFI-ENNRDKAAPKETVKEESGKDEL*EGMGASLLE 631
            VL+EFYA WCG+CK+LAP  + +   ++N+ +V I K +A      G   EV  +PT+ F     K  P  YEGDR+ E ++++I + +  + +P  T+   +G+    +   A  L+
Sbjct:  161 VLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQRSPDGTLLSTAGRIPTFDEFAAEFLD 278          

HSP 2 Score: 71.2478 bits (173), Expect = 4.797e-12
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = -3
Query:  383 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT-VFFRSASGKTVPYEGDRTKEDIVDFI 628
            L+EFYA WCGHCK LAP+ +E+   +++  DV+I K DA  +    D + + G+PT ++F     + V Y   R  + +  F+
Sbjct:   43 LIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLTQFV 125          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.797e-12
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = -3
Query:  386 LLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 628
            L++FYAPWCGHCKKL PI +EV +  ++  + V + K DAT+       F V+GYPT+           + G RTK+DI++F
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGD-LAYNHRGPRTKDDIIEF 125          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 38/107 (35.51%), Postives = 52/107 (48.60%), Query Frame = -3
Query:  326 LLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 628
            ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  182 MVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 38/107 (35.51%), Postives = 52/107 (48.60%), Query Frame = -3
Query:  326 LLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 628
            ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  182 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIISEDIAK 288          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 38/107 (35.51%), Postives = 52/107 (48.60%), Query Frame = -3
Query:  326 LLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 628
            ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  182 MVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = -3
Query:  326 LLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 628
            ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +  + + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  182 MVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGEAPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDVAK 288          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 38/107 (35.51%), Postives = 52/107 (48.60%), Query Frame = -3
Query:  326 LLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 628
            ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  182 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: TXND5_MOUSE (Thioredoxin domain-containing protein 5 OS=Mus musculus GN=Txndc5 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = -3
Query:  341 LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN-RDKAAPKETVK 625
            ++F+APWCGHCK LAP  +++A+  ++   V I K D T +       +V+GYPT+ +     K   Y+G R  E + D++++  +   A  ETV+
Sbjct:  196 IKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLESLRDYVQSQLQGSEAAPETVE 291          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDILT_RAT (Protein disulfide-isomerase-like protein of the testis OS=Rattus norvegicus GN=Pdilt PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  374 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR---SASGKTVPYEGDRTKEDIVDFIENN 631
            V + FYAPW   C+ L P+L+E+ + YQN + V+IAK D TANDI       + YP  FFR   + S + V Y+G+ T +   DF+E++
Sbjct:  405 VFVMFYAPWSEKCRVLLPLLEELGIKYQNHSTVIIAKIDITANDI--QLANPEQYP--FFRLFPTDSQEAVMYKGEHTMKGFCDFLESH 489          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDILT_MOUSE (Protein disulfide-isomerase-like protein of the testis OS=Mus musculus GN=Pdilt PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  374 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR---SASGKTVPYEGDRTKEDIVDFIENN 631
            V + FYAPW   C+ L P+L+E+ + YQN + V+IAK D TANDI       + YP  FFR   + S + V Y+G+ T +   DF+E++
Sbjct:  405 VFVMFYAPWSEKCRVLLPLLEELGIKYQNHSTVIIAKIDITANDI--QLANPEQYP--FFRLFPTDSQEAVMYKGEHTMKGFCDFLESH 489          
The following BLAST results are available for this feature:
BLAST of CN181477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PDI2_SCHPO3.673e-1233.05Protein disulfide-isomerase C17H9.14c OS=Schizosac... [more]
TMX3_PONAB4.797e-1242.68Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]
PDIA6_RAT8.182e-1235.51Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_PONAB8.182e-1235.51Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_MOUSE8.182e-1235.51Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
PDIA6_MESAU8.182e-1235.51Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
PDIA6_HUMAN8.182e-1235.51Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
TXND5_MOUSE2.381e-1134.38Thioredoxin domain-containing protein 5 OS=Mus mus... [more]
PDILT_RAT2.381e-1141.57Protein disulfide-isomerase-like protein of the te... [more]
PDILT_MOUSE2.381e-1141.57Protein disulfide-isomerase-like protein of the te... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181477 ID=CN181477; Name=CN181477; organism=Citrus sinensis; type=EST; length=633bp
TATCCATTTCGGATTTAACACGCAGTAAGTTACTCCTAGGCGCCGAAAAT
ACTAAAATATCACAACTATGCGAATACCAAAAAGTACTGCAGCTACAAAT
GCCGAAAATGCCTCCCCATTTTATTCACGGGAACAGAACAGATCTGTAAA
GGGAAATGGCCTAAGAAAAAGCTATAAGGGGGGATATAGGACAAGGGGGA
GGAGAACATCAGGCATTGTTTTGTCGACACTGATAGTTTTGGTATAACAT
CCGCCAAACACGCGCCAACCGACTATGTGCACGGCTCTCTAATAAACTCG
CACCCATTCCTTCTTAGAGCTCATCTTTTCCAGATTCCTCTTTTACAGTT
TCCTTGGGGGCAGCTTTGTCCCTGTTATTTTCAATGAAGTCAACAATATC
TTCTTTGGTCCTATCCCCCTCATAGGGCACTGTCTTTCCACTAGCAGATC
GGAAGAACACGGTTGGGTAACCTTGGACTTCAAAAGTGTCACCAGGAATA
TCATTTGCGGTTGCATCAAATTTTGCAATAACAACATCAGCATCGTTTTG
ATATGAGACAGCAACTTCATCCAAGATTGGAGCCAACTTTTTGCAGTGTC
CACACCAAGGAGCGTAAAACTCGAGCAAAACAT
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