CN181477

Overview
NameCN181477
Unique NameCN181477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3890 contig Csv1_Contig3890:239..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDILT_HUMAN (Protein disulfide-isomerase-like protein of the testis OS=Homo sapiens GN=PDILT PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  374 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR---SASGKTVPYEGDRTKEDIVDFIENN 631
            V + FYAPW   CK L P+L+E+   YQN + ++IAK D TANDI      +  YP  FFR   S S + V Y+G+ T +   DF+E++
Sbjct:  408 VFVMFYAPWSKKCKMLFPLLEELGRKYQNHSTIIIAKIDVTANDI--QLMYLDRYP--FFRLFPSGSQQAVLYKGEHTLKGFSDFLESH 492          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA5_RAT (Protein disulfide-isomerase A5 OS=Rattus norvegicus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  335 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 631
            VL+ F+APWCGHCKK+ P  +  A     DA+   V+A  DAT N+   + F +  +PT+ +F++   + VP    RTK+  +++++N      P+ T +E+
Sbjct:  294 VLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATINEALAERFHISAFPTLKYFKNGEQQAVP--ALRTKKKFIEWMQNPEAPPPPEPTWEEQ 393          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  383 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG--DTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFI 631
            VL+EFYAPWCGHCKKL P  + +  +Y N+ DVVIAK D  A D       + V G+PT+ +F   S     YE  R  +  +++I
Sbjct:  163 VLVEFYAPWCGHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYI 248          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA5_MOUSE (Protein disulfide-isomerase A5 OS=Mus musculus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  335 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 631
            VL+ F+APWCGHCKK+ P  +  A     DA+   V+A  DAT N+     F +  +PT+ +F++   + VP    RTK+  +++++N      P+ T +E+
Sbjct:  294 VLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATVNEALAGRFHISAFPTLKYFKNGEQQAVP--ALRTKKKFIEWMQNPEAPPPPEPTWEEQ 393          
BLAST of CN181477 vs. ExPASy Swiss-Prot
Match: PDIA5_HUMAN (Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  335 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 631
            VL+ F+APWCGHCKK+ P  ++ A +   +AD   V+A  DAT N    + F +  +PT+ +F++     VP    RTK+  +++++N      P+ T +E+
Sbjct:  296 VLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNGEKYAVPVL--RTKKKFLEWMQNPEAPPPPEPTWEEQ 395          
The following BLAST results are available for this feature:
BLAST of CN181477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PDILT_HUMAN2.381e-1142.70Protein disulfide-isomerase-like protein of the te... [more]
PDIA5_RAT2.381e-1134.31Protein disulfide-isomerase A5 OS=Rattus norvegicu... [more]
PDI1_DICDI2.381e-1143.02Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
PDIA5_MOUSE4.061e-1134.31Protein disulfide-isomerase A5 OS=Mus musculus GN=... [more]
PDIA5_HUMAN9.047e-1134.31Protein disulfide-isomerase A5 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181477 ID=CN181477; Name=CN181477; organism=Citrus sinensis; type=EST; length=633bp
TATCCATTTCGGATTTAACACGCAGTAAGTTACTCCTAGGCGCCGAAAAT
ACTAAAATATCACAACTATGCGAATACCAAAAAGTACTGCAGCTACAAAT
GCCGAAAATGCCTCCCCATTTTATTCACGGGAACAGAACAGATCTGTAAA
GGGAAATGGCCTAAGAAAAAGCTATAAGGGGGGATATAGGACAAGGGGGA
GGAGAACATCAGGCATTGTTTTGTCGACACTGATAGTTTTGGTATAACAT
CCGCCAAACACGCGCCAACCGACTATGTGCACGGCTCTCTAATAAACTCG
CACCCATTCCTTCTTAGAGCTCATCTTTTCCAGATTCCTCTTTTACAGTT
TCCTTGGGGGCAGCTTTGTCCCTGTTATTTTCAATGAAGTCAACAATATC
TTCTTTGGTCCTATCCCCCTCATAGGGCACTGTCTTTCCACTAGCAGATC
GGAAGAACACGGTTGGGTAACCTTGGACTTCAAAAGTGTCACCAGGAATA
TCATTTGCGGTTGCATCAAATTTTGCAATAACAACATCAGCATCGTTTTG
ATATGAGACAGCAACTTCATCCAAGATTGGAGCCAACTTTTTGCAGTGTC
CACACCAAGGAGCGTAAAACTCGAGCAAAACAT
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