CN181476

Overview
NameCN181476
Unique NameCN181476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3464 contig Csv1_Contig3464:356..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181476 vs. ExPASy Swiss-Prot
Match: PPSA_AERPE (Phosphoenolpyruvate synthase OS=Aeropyrum pernix GN=ppsA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 2 
Query:    8 VRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRQAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDHDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFD 376
            VRSSA VEDL   S AG  E+  NV      V    V   WASL+T RA+  R +  +  + A MAV+VQ+M+S   S V+ T+ P   + + +  E   GLGE +  G + TP R    K D
Sbjct:  121 VRSSATVEDLPEASFAGQQETYLNVKGEEEVV--EKVKTAWASLWTARALSYRDSLNIDHETALMAVVVQKMVSSRSSGVMFTIHPVTGEEDKIVIESIWGLGEYIVGG-KVTPDRFVVSKSD 240
The following BLAST results are available for this feature:
BLAST of CN181476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PPSA_AERPE4.351e-1139.02Phosphoenolpyruvate synthase OS=Aeropyrum pernix G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001A03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181476 ID=CN181476; Name=CN181476; organism=Citrus sinensis; type=EST; length=653bp
TTTGATTGTCCGTTCAAGTGCCAATGTTGAGGACTTGGCTGGAATGTCAG
CTGCAGGACTTTATGAATCAATCCCTAATGTTAACCCTTCGAATCTAAGA
GTTTTTCAAAATGCTGTTGCTCGAGTGTGGGCTTCGCTTTACACTCGCAG
AGCAGTTTTAAGCCGTCAAGCTGCTGGTGTGTCTCAGAAAGATGCTACAA
TGGCAGTTCTTGTGCAAGAAATGCTTTCCCCAGATCTCTCATTTGTGCTT
CATACCCTCAGCCCAACAGATCATGACCATAACTCTGTAGAGGCTGAAAT
TGCCCCTGGACTTGGTGAAACTCTAGCTTCTGGTACCAGAGGCACACCGT
GGCGTCTGTCTTCTGGGAAGTTTGATGGGCTGGTGAGGACACAGGCGTTT
GCCAATTTCAGTGAAGAGATGCTCGTATCTGGTGCAGGTCCTGCTGATGG
GGTAGTGATTCACTTGACTGTAGATTATAGCAAGAAACCCTTAACAGTTG
ATCCAATTTTCCGTCGTCAGCTCGGTCAGCGCCTCTGTTCTGTTGGTTTC
TTTCTTGAGAGGAAGTTTGGCTGCCCACAGGACGTAGAAGGATGCCTGGT
TGGCAAGGATATCTATGTAGTCCAAACGCGTCCACAACCCCACTAAAATA
TTC
back to top