CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.460e-48
Identity = 96/142 (67.61%), Postives = 111/142 (78.17%), Query Frame = 1
Query:  196 DSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618
            D   T   G A KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+
Sbjct:   37 DGELTVTGGRADKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNK 178          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.460e-48
Identity = 93/136 (68.38%), Postives = 113/136 (83.09%), Query Frame = 1
Query:  214 ANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618
            +NG+A KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+
Sbjct:   41 SNGDAEKKGSYVGIHSTGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNK 176          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.196e-48
Identity = 101/166 (60.84%), Postives = 119/166 (71.69%), Query Frame = 1
Query:  184 AQAPDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPPIV 633
            A A  + A  ANG A KKG              YVG+HS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  ++   ++L  K+  P IV
Sbjct:   21 AAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHSTGFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIV 186          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.480e-48
Identity = 95/138 (68.84%), Postives = 110/138 (79.71%), Query Frame = 1
Query:  208 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618
            T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   +LL N+
Sbjct:   39 TVSGGRPDKKGSYVGIHSTGFRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNK 176          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.348e-48
Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  184 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNK 177          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.221e-47
Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  184 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNK 177          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.221e-47
Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  184 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNK 177          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_SCLS1 (ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.083e-47
Identity = 93/140 (66.43%), Postives = 112/140 (80.00%), Query Frame = 1
Query:  199 SVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            ++    N  AAKKG YVGIHS+GFR+FLLKPELLRAI   GFEHPSEVQ  CIPQAILG DV+CQAKSG+GKTAVFVL+TLQQ E   G+ + LV+CHTRELAYQI +E++RF  ++PD+K+ VFYGGV I    ++LKN
Sbjct:   38 NLTVSGNAAAAKKGSYVGIHSTGFREFLLKPELLRAISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKN 177          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.059e-47
Identity = 97/145 (66.90%), Postives = 113/145 (77.93%), Query Frame = 1
Query:  208 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPPIV 633
            T +   A KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  ++   +LL  K+  P IV
Sbjct:   41 TVSGARADKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIV 185          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.034e-46
Identity = 92/139 (66.19%), Postives = 112/139 (80.58%), Query Frame = 1
Query:  205 ATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618
            A  A  ++ KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+
Sbjct:   39 AEGATTDSEKKGSYVGIHSTGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNK 177          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
SUB2_EMENI2.460e-4867.61ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]
SUB21_VANPO2.460e-4868.38ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozy... [more]
SUB2_COCIM4.196e-4860.84ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_ASPNC5.480e-4868.84ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
SUB2_ASPCL9.348e-4865.75ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_NEOFI1.221e-4765.75ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SUB2_ASPFU1.221e-4765.75ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
SUB2_SCLS12.083e-4766.43ATP-dependent RNA helicase sub2 OS=Sclerotinia scl... [more]
SUB2_AJECN6.059e-4766.90ATP-dependent RNA helicase SUB2 OS=Ajellomyces cap... [more]
SUB22_VANPO1.034e-4666.19ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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