CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            F +F L PELL +I    +  P+ +Q   IP A+ G D++  A++G GKTA F +  LQ          ALVL  TRELA+QI   F+   + +    V +  G   ++  +DL++
Sbjct:  100 FTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMR 215          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F+D  +   L  A  + G++ P+ +Q E IP A+   D+I  A++G GKT  F L  LQ     P  + ALVL  TRELA QI   FE   + L  ++ A+  GG+++
Sbjct:   67 FQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQSFEALGS-LISLRCALILGGLDM 173          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  316 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            G   P+ VQ  C+P+ + G DV+  A++G GKTA F L  L +   +P  V ALV+  TRELA+Q+  +F+   + L +++ +V  GG+++
Sbjct:   77 GMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCL-NLRCSVIVGGMDM 166          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_NEOFI (ATP-dependent RNA helicase drs1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=drs1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F+DF L   +LR +    F  P+ +Q + IP A+LG D++  A +G GKTA FV+  L++    P +V      +L  TRELA Q  +   + +T+  DI      GG +++  +++LK     I+
Sbjct:  301 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATH-TDITFCQLVGGFSLREQENILKKRPDVII 425          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 38/130 (29.23%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  250 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT--EPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            + S  F++  L   +L+++   GF  P+ VQ   IP A+LG D++  A++G GKTA +++  +++     N     A++L  TRELA Q+     +   ++ ++   +  GG+++K  +  LK   P IV
Sbjct:  193 LKSKTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLLYVKNSTSTKAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTR-PDIV 321          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX59_RAT (Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  286 PELLRA-IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 582
            PE L   +  SG+E P+ +Q + IP  +LG D++  A +G GKTA F+L  + +  P     +AL+L  TRELA QI  + +     LP +K  +  GG+
Sbjct:  211 PETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRALPEDKTPSALILTPTRELAIQIERQAKELMRGLPRMKTVLLVGGL 310          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_EMENI (ATP-dependent RNA helicase dbp9 OS=Emericella nidulans GN=dbp9 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 44/124 (35.48%), Postives = 62/124 (50.00%), Query Frame = 1
Query:  190 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 543
            A D  +T+AN     KG        F    L P L +A+V   F  P+ VQ + IP A+ G D++ +AK+G GKTA +VL  LQ        +P+    T L+L  TRELA Q+      F+ +
Sbjct:    7 ANDVPSTEANEAEEVKG--ADRDEDFETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAIDPSMKATTGLILVPTRELAEQVQKVITTFAAF 128          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_ASPCL (ATP-dependent RNA helicase dbp9 OS=Aspergillus clavatus GN=dbp9 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  205 ATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 543
            A  A G+ AK       ++ F +  L P L +A++   F  P+ VQ + IP A+ G D++ +AK+G GKTA +VL  LQ        +P+    T L+L  TRELA Q+     +F+ +
Sbjct:   13 AEVAEGKEAKDA----DNTDFENLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSVITKFTAF 127          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RRP3_LODEL9.139e-1134.48ATP-dependent rRNA helicase RRP3 OS=Lodderomyces e... [more]
RRP3_CHAGB9.139e-1137.04ATP-dependent rRNA helicase RRP3 OS=Chaetomium glo... [more]
RH36_ARATH9.139e-1137.36DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]
DRS1_NEOFI9.139e-1132.54ATP-dependent RNA helicase drs1 OS=Neosartorya fis... [more]
DRS1_LODEL9.139e-1129.23ATP-dependent RNA helicase DRS1 OS=Lodderomyces el... [more]
DDX59_RAT9.139e-1137.00Probable ATP-dependent RNA helicase DDX59 OS=Rattu... [more]
DBP9_EMENI9.139e-1135.48ATP-dependent RNA helicase dbp9 OS=Emericella nidu... [more]
DBP9_ASPCL9.139e-1134.45ATP-dependent RNA helicase dbp9 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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