CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.317e-17
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q     +    +L  I V V  GG  +K
Sbjct:   51 FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVSTGGTGLK 158          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.317e-17
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 624
            F DF LK ELL  I ++GFE PS VQ E IP A+ G D++ +AK+G GKTA FV+  LQQ  P   ++ AL+L  TRELA Q          +L  ++  V  GG +++   D+L+   P
Sbjct:   32 FEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHL-GLQCMVTTGGTSLR--DDILRLNDP 148          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ +P    +  ++L  TRELA Q     +    YL +I+V V  GG ++K
Sbjct:  149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYL-NIQVMVSTGGTSLK 256          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_MAGGR (ATP-dependent RNA helicase DBP9 OS=Magnaporthe grisea GN=DBP9 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            SS F D  L P LL+A+    F+ P+ VQ + IP A+ G DV+ +AK+G GKTA +VL  LQ      Q  P    +++L+L  TREL  Q+  E ERFS +   +++V      V+  + + LL++  P IV
Sbjct:   42 SSSFADLGLDPRLLQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPILQAVLKRKQINPGATYISSLILVPTRELTVQVTKEVERFSAFCAKEVQVVGLTDKVSDAVQRSLLQSSSPDIV 174          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q     +    +L  I V V  GG  +
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVTTGGTGL 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_ASPFU (ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q     +    +L  I V V  GG  +
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVTTGGTGL 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q     +    +L  I V V  GG  +
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVTTGGTGL 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  253 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            H+  F D  + PEL RA    GF+ PS++Q E IP A+ G D+I  A++G GKTA F L  LQ    NP    ALVL  TRELAYQI  +     + +  ++ AV  GG+++
Sbjct:   36 HNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGI-GVRTAVLVGGMDM 146          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F DF LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++ +    ++ AL++  TRELA Q          +   I   V  GG N++
Sbjct:   36 FEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR 143          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F D+ LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ +L++ +    ++  L+L  TRELA Q     +    ++ ++KV V  GG  ++
Sbjct:   46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHM-NVKVMVTTGGTTLR 153          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DHH1_PHANO1.317e-1743.12ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
DHH1_DEBHA1.317e-1742.50ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
RH12_ORYSJ2.933e-1741.28DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
DBP9_MAGGR5.003e-1738.35ATP-dependent RNA helicase DBP9 OS=Magnaporthe gri... [more]
DHH1_NEOFI8.534e-1742.59ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]
DHH1_ASPFU8.534e-1742.59ATP-dependent RNA helicase dhh1 OS=Aspergillus fum... [more]
DHH1_ASPCL8.534e-1742.59ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]
RRP3_CRYNE1.115e-1642.86ATP-dependent rRNA helicase RRP3 OS=Cryptococcus n... [more]
DHH1_VANPO1.456e-1641.28ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_SCHPO1.456e-1639.45Putative ATP-dependent RNA helicase ste13 OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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