CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494 + +L GPPG GKT AR +A + + + + SKY G+ E+L+ +F++A L +IIF+DEVDS R S HEA+RR+ + L + DG + ++VV+AATNR Q+LD A + RF + LP+ + R+ Sbjct: 524 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHL-QPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRE 664
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494 + +L GPPG GKT AR +A + + + + SKY G+ E+L+ +F++A + +IIF+DEVDS R S HEA+RR+ + L + DG ++VV+AATNR Q+LD A + RF + LPD + R+ Sbjct: 541 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRE 681
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 64/172 (37.21%), Postives = 94/172 (54.65%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 PE+++ + +E P+ VL GPPG GKT A+ +A++ + V ++ K+ GE RL+ ++F LA E AIIF+DE+D+ R E R R L LL ++DGF+ V +IAATNR LDPAL+ RFD +I LP+ ++R EI + K Sbjct: 162 PELFEKVGIEP--------PKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKE-KAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTK 324
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 67/204 (32.84%), Postives = 102/204 (50.00%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE+Y+DI + P+ V+ G PGTGKT A+ +AN + V ++ KY G+ +L+ ++F +A+EL + +I+F+DE+D+ R S +R + LL Q+DGF+ V VI ATNR + LDPAL+ R D I F LPD + R+ I + SG DI+ +C +A Sbjct: 216 PELYEDIGIRP--------PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADEL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEA 410
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 66/204 (32.35%), Postives = 104/204 (50.98%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE+Y+DI ++ P+ V+ G PGTGKT A+ +AN + V ++ KY G+ +L+ ++F +A++L + +I+F+DE+D+ R +S +R + LL Q+DGF+ V VI ATNR + LDPAL+ R D I F LPD + R+ I + SG DI+ +C +A Sbjct: 211 PELYEDIGIKP--------PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEA 405
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 62/147 (42.18%), Postives = 81/147 (55.10%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ VL GPPGTGKT AR +A GV + V ++ KY GES R++ ++F A E +IF+DE+D+ R SE A R R L LL Q+DGF+ + +I ATNR LDPAL+ R D I LP+ R EI Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKE-HEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEI 311
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 67/168 (39.88%), Postives = 88/168 (52.38%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEV-----VMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500 PE+++ KF+ PR LF GPPGTGKT AR +AN+ V + +SK+ GESER L +F A L +IIF DE+D A R S + I+S LL +DG + ++VVI ATNR +DPAL RFD F LPD + R+ I Sbjct: 423 PEIFE--------KFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAY-LMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQKARKHI 581
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK--HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 +PE+++ + + P+ VL GPPGTGKT A+ +A + + V ++ K+ GE +L+ VF LA E + IIF+DE+D+ A R + R R L LL ++DGF+ V +IAATNR LDPA++ RFD +I +PD + R +I + + + M G D++ VC +A Sbjct: 170 NPELFEKVGIVP--------PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNLKGVDLREVAKLAENMVGADLKAVCTEA 364
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK--HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 +PE+++ + + P+ VL GPPGTGKT A+ +A + + V ++ K+ GE +L+ VF LA E + IIF+DE+D+ A R + R R L LL ++DGF+ V +IAATNR LDPA++ RFD +I +PD + R +I + + + M G D++ VC +A Sbjct: 170 NPELFEKVGIVP--------PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNLKGVDLREVAKIAENMVGADLKAVCTEA 364
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 67/204 (32.84%), Postives = 98/204 (48.04%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMH---EATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE Y ++ +E P+ VL GPPGTGKT CAR +AN+ + V ++ KY GE R++ ++F +A +IF DE+D+ AR + +R + L+ Q+DGF+ + V+ ATNR LDPAL+ R D + F LPD R I +AK +G +IR VC +A Sbjct: 200 PERYVNLGIEP--------PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA-RTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEA 394 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |