CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20 Identity = 67/204 (32.84%), Postives = 105/204 (51.47%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ---EIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE+Y++I ++ P+ V+ G PGTGKT A+ +ANQ + V ++ KY G+ +L+ ++F +A+E +I+F+DE+D+ R DS+ +R + LL Q+DGF+ V VI ATNR + LDPALI R D I F LPD + ++ EI +SG DI+ +C ++ Sbjct: 207 PELYEEIGIKP--------PKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECA-PSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTES 401
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20 Identity = 70/198 (35.35%), Postives = 98/198 (49.49%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + V + SKY GESE+L+ +F +A + A IF+DE+DS R SE HEA+RR+ + LL Q+DG + K V+V+AATN D+D AL R + I LP + R+E+ + M SG DI +VC+ A + I G Sbjct: 243 KGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEG 439
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4) HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20 Identity = 69/208 (33.17%), Postives = 103/208 (49.52%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 PE+++ + + +P+ V+ GPPGTGKT AR +A+ + V ++ KY GE R++ ++F +A E +IIF+DE+DS R DSE+ +R + LL Q+DGFE K + +I ATNR LDPAL+ R D I F P R EI +++ M SG D++ VC +A Sbjct: 171 PELFESLGIA--------QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSTRVEGSGGGDSEV----QRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEA 365
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20 Identity = 65/186 (34.95%), Postives = 94/186 (50.54%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ VL GPPGTGKT AR +AN+ + V ++ KY GE R++ ++F +A I+F DEVD+ AR + +E R +L + + Q+DGF+ + V+ ATNR LDPAL+ R D + FGLPD E R +I + + +G DIR VC +A Sbjct: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI-VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEA 385
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20 Identity = 65/186 (34.95%), Postives = 94/186 (50.54%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ VL GPPGTGKT AR +AN+ + V ++ KY GE R++ ++F +A I+F DEVD+ AR + +E R +L + + Q+DGF+ + V+ ATNR LDPAL+ R D + FGLPD E R +I + + +G DIR VC +A Sbjct: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI-VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEA 385
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20 Identity = 70/198 (35.35%), Postives = 97/198 (48.99%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQE---IAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + G V + SKY GESE+L+ +F +A IF+DE+DS R S+ HEA+RR+ S LL Q+DG + K V+V+AATN D+D AL R + I LP + R E I+ + + SG DI +VC+ A + I G Sbjct: 242 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDASLMAMRRRING 438
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20 Identity = 55/153 (35.95%), Postives = 91/153 (59.48%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P+ +L GPPGTGKT A+ A +A VP ++ + Y G + + ++F A +L AIIF+DE+D+ +R S + ++ + L+ +L ++DG ++ ++++ ATNR LDPAL+ RFD +IT GLPD + R+EI ++K Sbjct: 245 PKGILLGGPPGTGKTLLAKATAGEANVPFFFISASSFVELYVGLGAKRVREMFKEARKLA-PAIIFIDELDAVGRSRGSGIGGGNDEREQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRFDRIITVGLPDIKEREEILKLHSK 396
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 61/153 (39.87%), Postives = 83/153 (54.25%), Query Frame = 3 Query: 57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 K N P+ VL GPPGTGKT A+ +A++ ++ ++ KY GE RL+ ++F LA E +I+F+DE+D+ +R M R R L LL +DGFE V +I ATNR LD AL+ RFD +I LPD E R I Sbjct: 181 KIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFDLAKE-KAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSI 332
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 68/204 (33.33%), Postives = 99/204 (48.53%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXMSGR---DIRDVCQQA 605 PE++ I +E P+ VL GPPGTGKT A+ +A++ M V ++ KY GE RL+ ++F LA + IIF+DE+D+ +R ++ +R L LL +DGFE V +I ATNR LD AL+ RFD +I LPD E R I + + G+ D+R +C +A Sbjct: 201 PELFTQIGIEP--------PKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAKK-KAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEA 395
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 PE+++++ + +P+ VL GPPGTGKT AR +A+ + V ++ KY GE RL+ ++F +A E +IIF+DE+DS R DSE+ +R + LL Q+DGFE + VI ATNR LDPAL+ R D I F P+ R EI +++ M SG +++ VC +A Sbjct: 219 PELFENLGIA--------QPKGVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMARE-HAPSIIFMDEIDSIGSTRGDSNKGSDSEV----QRTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEA 413 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |