CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 69/198 (34.85%), Postives = 97/198 (48.99%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQE---IAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + G V + SKY GESE+L+ +F +A IF+DE+DS R S+ HEA+RR+ S LL Q+DG + K V+V+AATN D+D AL R + I LP + R E I+ + + SG DI ++C+ A + I G Sbjct: 240 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRING 436
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 69/198 (34.85%), Postives = 97/198 (48.99%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQE---IAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + G V + SKY GESE+L+ +F +A IF+DE+DS R S+ HEA+RR+ S LL Q+DG + K V+V+AATN D+D AL R + I LP + R E I+ + + SG DI ++C+ A + I G Sbjct: 240 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRING 436
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 P+ VL GPPGTGKT AR +A +AGVP + G R + +F+ A + + IIF+DE+D+ +R+ + + R L+ LL ++DGF+Q++ ++VIAATN Q LD AL+ RFD I PD E R++I Sbjct: 256 PKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKR-SPCIIFMDEIDAIGGSRNPKDQQYMRMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQI 398
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 77/242 (31.82%), Postives = 110/242 (45.45%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXMSGR---DIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIESATN 707 PEV+ + +E P+ VL GPPGTGKT AR +A+Q + V ++ KY GE RL+ ++F LA + + +IIF+DE+D+ +R D E+H R L LL ++DGF V +I ATNR LD AL+ RFD +I PD E R I + G+ D+R +C +A I D E L ++ IE +N Sbjct: 176 PEVFRKMGIEP--------PKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKK-KSPSIIFIDEIDAIGASRTESNTSGDREVH----RTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMF--------AIRSDHEMVTLEDFEQSIEKFSN 396
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 69/209 (33.01%), Postives = 106/209 (50.72%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 PE+++ + + +P+ VL GPPGTGKT AR +A+ + V ++ KY GE R++ ++F +A E +IIF+DE+DS AR DSE+ +R + LL Q+DGFE K+ V+ ATNR LD AL+ R D I F P+ E+R +I +++ M SG +++ VC +A Sbjct: 184 PELFESLGIA--------QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEV----QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEA 379
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 69/209 (33.01%), Postives = 106/209 (50.72%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 PE+++ + + +P+ VL GPPGTGKT AR +A+ + V ++ KY GE R++ ++F +A E +IIF+DE+DS AR DSE+ +R + LL Q+DGFE K+ V+ ATNR LD AL+ R D I F P+ E+R +I +++ M SG +++ VC +A Sbjct: 184 PELFESLGIA--------QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEV----QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEA 379
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 63/146 (43.15%), Postives = 80/146 (54.79%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQE 497 PR VL GPPGTGKT + +AN + V + KY GE R++ VF +A E AIIF+DE+D+ A R A R RIL LL Q+DGF+Q V VI ATNR LDPAL+ R D I F P + +R++ Sbjct: 168 PRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARE-NAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEF--PSYRDRRQ 310
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 69/198 (34.85%), Postives = 96/198 (48.48%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + + + SKY GESE+L+ +F +A IF+DE+DS R SE HEA+RR+ + LL Q+DG + K V+V+AATN D+D AL R + I LP + R+E+ K M SG DI +VC+ A + I G Sbjct: 244 KGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEG 440
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 69/198 (34.85%), Postives = 96/198 (48.48%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + + + SKY GESE+L+ +F +A IF+DE+DS R SE HEA+RR+ + LL Q+DG + K V+V+AATN D+D AL R + I LP + R+E+ K M SG DI +VC+ A + I G Sbjct: 240 KGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEG 436
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 69/198 (34.85%), Postives = 97/198 (48.99%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + G V + SKY GESE+L+ +F +A IF+DE+DS R S+ HEA+RR+ S LL Q+DG + K V+V+AATN D+D AL R + I LP + R E+ + + SG DI +VC+ A + I+G Sbjct: 240 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQG 436 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |