CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19 Identity = 69/197 (35.03%), Postives = 95/197 (48.22%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + V + SKY GESE+L+ +F +A IF+DE+DS R SE HEA+RR+ + LL Q+DG + K V+V+AATN D+D AL R + I LP + R ++ K M SG DI +VC+ A + I G Sbjct: 238 KGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIEG 433
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 69/207 (33.33%), Postives = 98/207 (47.34%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEV-----VMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE+Y + F PR VLF GPPGTGKT AR +A + + ++SK+ GE+ER L +F A + +IIF DE+D A R S+ + I+S LL +DG + +V+VI ATNR +DPAL RFD F LPD + R +I +++ G D+R +C +A Sbjct: 436 PELYQN--------FNITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGEAERQLRLLFEEAKK-HQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMDNRGQVIVIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTKGYGGADLRSLCTEA 633
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 62/160 (38.75%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQID--GFEQDKK--------VVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAK 518 P +LF GPPG GKT A IAN+AGVP + V+S G SE + ++FS A +I+F+DE+D+ R+++ E +RI++ LL +D G + DK V+VI ATNR LDPAL RF++ I PD + R EI + A+ Sbjct: 267 PSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTA-PSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQ 425 HSP 2 Score: 87.4261 bits (215), Expect = 8.019e-17 Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P++Y ++ F L GPPG GKT A+ AN+AG M++ +++KY GESE + +F A +IF DEVD+ +R E R+L+ L ++DG E+ + V VI ATNR +DPA + RF +++ LP+ + R I A+ Sbjct: 551 PDIYKAFGVDLETGF--------LLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCA-PCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGER-RNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIAR 709
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 61/168 (36.31%), Postives = 95/168 (56.55%), Query Frame = 3 Query: 12 SSPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 +SPE + I +E P+ VL G PGTGKT A+ +A++ + V ++ KY G+ +L+ ++F +A + +IIF+DE+DS A R +E A R R L LL ++DGF++ K + +IAATNR LDPA++ RFD ++ +P E R +I Sbjct: 180 TSPERFARIGIEP--------PKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARK-KAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKI 338
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 62/185 (33.51%), Postives = 92/185 (49.73%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ VL GPPG+GKT AR +AN+ G + V ++ KY GE R++ ++F +A I+F DE+D+ AR + +R + +L Q+DGF+ + V+ ATNR LDPAL+ R D + F LPD E R +I + + +G DIR VC +A Sbjct: 239 PKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARS-KKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEA 422
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 59/144 (40.97%), Postives = 81/144 (56.25%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENR 491 P+ L GPPGTGKT AR A Q+ + + ++ + G+ +L+ F+LA E + AIIF+DE+D+ R DSE +R + LL Q+DGF D +V VIAATNR LDPAL+ R D + F LP+ E R Sbjct: 219 PKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKE-KSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEAR 361
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 P+ +L GPPGTGKT + IA+Q+G + + SK+ GE E+++ +F++A A+IF+DE+DS R HE++RRI + L Q+DG + +++V+ ATNR Q++D A R + LP+ R++I Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA-RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 579
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 P+ +L GPPGTGKT + IA+Q+G + + SK+ GE E+++ +F++A A+IF+DE+DS R HE++RRI + L Q+DG + +++V+ ATNR Q++D A R + LP+ R++I Sbjct: 443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA-RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 585
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 P+ +L GPPGTGKT + IA+Q+G + + SK+ GE E+++ +F++A A+IF+DE+DS R HE++RRI + L Q+DG + +++V+ ATNR Q++D A R + LP+ R++I Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA-RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 576
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19 Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605 +P+ VL GPPGTGKT AR +A+ + V ++ K+ GE R++ ++F +A E +IIF+DE+DS +R DSE+ +R + LL Q+DGFE K + VI ATNR LD AL+ R D I F P+ E R +I +++ M SG +++ VC +A Sbjct: 182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |