CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 69/197 (35.03%), Postives = 95/197 (48.22%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRG 638
            + VL  GPPGTGKT  A+ +A +       V    + SKY GESE+L+  +F +A        IF+DE+DS    R  SE HEA+RR+ + LL Q+DG       +  K V+V+AATN   D+D AL  R +  I   LP  + R ++     K                M   SG DI +VC+ A      + I G
Sbjct:  238 KGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIEG 433          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 69/207 (33.33%), Postives = 98/207 (47.34%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEV-----VMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE+Y +        F    PR VLF GPPGTGKT  AR +A         +   +     ++SK+ GE+ER L  +F  A +    +IIF DE+D  A  R S+  +    I+S LL  +DG +   +V+VI ATNR   +DPAL    RFD    F LPD + R +I      +++                   G D+R +C +A
Sbjct:  436 PELYQN--------FNITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGEAERQLRLLFEEAKK-HQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMDNRGQVIVIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTKGYGGADLRSLCTEA 633          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 62/160 (38.75%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQID--GFEQDKK--------VVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAK 518
            P  +LF GPPG GKT  A  IAN+AGVP   +    V+S   G SE  + ++FS A      +I+F+DE+D+    R+++  E  +RI++ LL  +D  G + DK         V+VI ATNR   LDPAL    RF++ I    PD + R EI +  A+
Sbjct:  267 PSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTA-PSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQ 425          

HSP 2 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P++Y    ++    F        L  GPPG GKT  A+  AN+AG   M++    +++KY GESE  +  +F  A       +IF DEVD+   +R  E      R+L+  L ++DG E+ + V VI ATNR   +DPA +   RF +++   LP+ + R  I    A+
Sbjct:  551 PDIYKAFGVDLETGF--------LLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCA-PCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGER-RNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIAR 709          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 61/168 (36.31%), Postives = 95/168 (56.55%), Query Frame = 3
Query:   12 SSPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            +SPE +  I +E         P+ VL  G PGTGKT  A+ +A++     + V    ++ KY G+  +L+ ++F +A +    +IIF+DE+DS A  R +E   A R   R L  LL ++DGF++ K + +IAATNR   LDPA++   RFD ++   +P  E R +I
Sbjct:  180 TSPERFARIGIEP--------PKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARK-KAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKI 338          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 62/185 (33.51%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPG+GKT  AR +AN+ G   + V    ++ KY GE  R++ ++F +A       I+F DE+D+   AR  +        +R +  +L Q+DGF+    + V+ ATNR   LDPAL+   R D  + F LPD E R +I   + +                    +G DIR VC +A
Sbjct:  239 PKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARS-KKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEA 422          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 59/144 (40.97%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENR 491
            P+  L  GPPGTGKT  AR  A Q+    + +    ++  + G+  +L+   F+LA E  + AIIF+DE+D+    R DSE       +R +  LL Q+DGF  D +V VIAATNR   LDPAL+   R D  + F LP+ E R
Sbjct:  219 PKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKE-KSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEAR 361          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPGTGKT   + IA+Q+G     +    + SK+ GE E+++  +F++A      A+IF+DE+DS    R    HE++RRI +  L Q+DG     + +++V+ ATNR Q++D A   R    +   LP+   R++I
Sbjct:  437 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA-RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 579          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPGTGKT   + IA+Q+G     +    + SK+ GE E+++  +F++A      A+IF+DE+DS    R    HE++RRI +  L Q+DG     + +++V+ ATNR Q++D A   R    +   LP+   R++I
Sbjct:  443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA-RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 585          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPGTGKT   + IA+Q+G     +    + SK+ GE E+++  +F++A      A+IF+DE+DS    R    HE++RRI +  L Q+DG     + +++V+ ATNR Q++D A   R    +   LP+   R++I
Sbjct:  434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA-RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 576          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 605
            +P+ VL  GPPGTGKT  AR +A+      + V    ++ K+ GE  R++ ++F +A E    +IIF+DE+DS   +R       DSE+    +R +  LL Q+DGFE  K + VI ATNR   LD AL+   R D  I F  P+ E R +I   +++                M   SG +++ VC +A
Sbjct:  182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE-HAPSIIFMDEIDSIGSSRLEGGSGGDSEV----QRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
KTNA1_DANRE1.726e-1935.03Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
TBP7_YEAST2.255e-1933.33TAT-binding homolog 7 OS=Saccharomyces cerevisiae ... [more]
CD48C_ARATH2.255e-1938.75Cell division control protein 48 homolog C OS=Arab... [more]
PSMR_METMA2.945e-1936.31Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS7B_ARATH2.945e-1933.5126S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS6A_SCHPO2.945e-1940.9726S protease regulatory subunit 6A OS=Schizosaccha... [more]
FIGL1_RAT2.945e-1935.42Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
FIGL1_MOUSE2.945e-1935.42Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
FIGL1_HUMAN2.945e-1935.42Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
PRS8_RAT3.846e-1934.7426S protease regulatory subunit 8 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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