CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16 Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 R +L GPPGTGK+ A+ +A +A + V +MSK+ GESE+L+ +F LA + +IIF+DEVDS +R+ EA RRI + L Q+ G + +V+ ATN LD A+ RF+ I LP+ R ++ Sbjct: 161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQ-HKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQM 302
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16 Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 R +L GPPGTGK+ A+ +A +A + V +MSK+ GESE+L+ +F LA + +IIF+DEVDS +R+ EA RRI + L Q+ G + +V+ ATN LD A+ RF+ I LP+ R ++ Sbjct: 161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQ-HKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQM 302
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16 Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = 3 Query: 6 LASSPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA 515 + SP Y I + R + P +L G PG GKT A I++ V + + ++ KY G+SE+ + +FS A ++ ++F DE DS A R + T R+++ +L Q+DG E V ++AAT R +DPAL+ R D +I LP+ E R E+ + A Sbjct: 621 IIESPVKYSLIYKQCRLRL----PTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRA-QMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLA 787
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16 Identity = 63/215 (29.30%), Postives = 102/215 (47.44%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVV-VIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI---------AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQ 683 + +L GPPGTGKT A+ +A + + ++SK+ G+SE+L+ +F LA + IFLDE++S R + HE + R+ + LL Q+DG + + +V V+AA+N +LD A++ R + I LP E RQ + ++ + SG DI+ VC++A KI E + LP +Q Sbjct: 288 KGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELA-RYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQ 501
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16 Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 521 R +L GPPGTGK+ A+ +A +A + + ++SK+ GESE+L+ +F LA E +IIF+DE+DS +R EA RRI + L Q+ G D ++V+ ATN LD A+ RF+ I LP+ R AA + H Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR---AAMFKLH 313
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16 Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA 515 P+ VL GPPGTGKT A+ IA +A VP + + + G + +F A + ++F+DE+D+ R + + ++ + L+ LL ++DGFE + V+VIAATNR LD AL+ RFD I +PD ++R I +A Sbjct: 187 PKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKQ-NAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKSRIAILKVHA 337
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16 Identity = 61/187 (32.62%), Postives = 89/187 (47.59%), Query Frame = 3 Query: 84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGF----EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ-----EIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 +LF GPPGTGKT A+ IA + + V +++ Y GESE + +VF A + ++F DE+DS A R ++ RI+S LL ++DG E V VI ATNR LD AL+ RFD M+ G+ D +Q + ++A H +G D+ +C A Sbjct: 1066 ILFYGPPGTGKTLLAKAIATEFSLNFFSVKGPELLNMYIGESEANVRRVFQRARD-ARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLPLTYTGADLYALCSDA 1251
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16 Identity = 56/142 (39.44%), Postives = 76/142 (53.52%), Query Frame = 3 Query: 84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQD-KKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494 +LF GPPGTGKT A+ IA + V +++ Y GESE + +VF A + +IF DEVDS A R ++ RI+S LL ++DG D V +I ATNR LD AL+ RFD +I G+ D +Q Sbjct: 754 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARD-AKPCVIFFDEVDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQ 894
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16 Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P+ L GPPGTGKT AR +A +AGVP + + G + +F A I+F+DE+D+ R + M ++ + ++ LL ++DGF + V+V+AATNR LD AL+ RFD +T PD R +I +++ Sbjct: 283 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSR 434
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15 Identity = 58/197 (29.44%), Postives = 92/197 (46.70%), Query Frame = 3 Query: 72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVA--RDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ-----EIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIR 635 R +L GPPGTGKT A+ +A + + + V +++ Y G+SE + +VF+ A IIF DE+DS A + R + R++S LL ++DG + V VI ATNR LDPAL+ RFD ++ G + Q I ++ ++G D+ +C A + + +R Sbjct: 734 RRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAA-PCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALKRRVR 929 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |