CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15 Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P+ VL GPPGTGKT A+ IA +A P + + + G + +F A E I+F+DE+D+ R + ++ + L+ LL ++DGF D V+V+AATNR LD AL+ RFD I LP+ R I ++K Sbjct: 204 PKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-KAPCIVFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSK 355
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15 Identity = 55/159 (34.59%), Postives = 85/159 (53.46%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQ--------------------IDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491 R +L GPPGTGKT AR +A ++ + + SKY GESE+L+ +F++A +L + +IIF+DE+DS +R++E +E++RRI + L Q +G E D +V+V+AATN +D A RF LP+ + R Sbjct: 639 RGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKL-SPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARRRFVRRQYIPLPEDQTR 796
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15 Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 72 RPRA-VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--DSEMHEATRRILSVLLRQIDGFEQD--KKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHE 485 +PR+ VL GPPGTGKT A+ +A + + + + +++ Y GESE + VF A + +IF DE+DS A R S+ R++S LL ++D +D K V VI ATNR LDP+L+ RFD ++ G+ E Sbjct: 686 KPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARN-SSPCVIFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSE 829
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15 Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 3 Query: 84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQ-DKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494 +LF GPPGTGKT A+ IA+ + V +++ Y GESE + +VF A + +IF DE+DS A R ++ RI+S LL ++DG V VI ATNR LD AL+ RFD M+ G+ D + +Q Sbjct: 738 ILFYGPPGTGKTLLAKAIASNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARD-AKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQ 878
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15 Identity = 63/215 (29.30%), Postives = 99/215 (46.05%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVV-VIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY---------AKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQ 683 + +L GPPGTGKT A+ +A + + ++SK+ G+SE+L+ +F LA + IFLDE++S R HE + R+ + LL Q+DG + + +V V+AA+N +LD A++ R + I LP E RQ + + + SG DI+ VC++A KI E LP +Q Sbjct: 289 KGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELA-RYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQSESNNLPGIQ 502
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15 Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P+ L GPPGTGKT AR +A +AGVP + + G + +F A + I+F+DE+D+ R + + ++ + ++ LL ++DGF + V+V+AATNR LD AL+ RFD +T PD R +I +++ Sbjct: 265 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKA-KAKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSR 416
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15 Identity = 57/164 (34.76%), Postives = 83/164 (50.61%), Query Frame = 3 Query: 57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSF--------AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 K + PR + GPPGTGKT A+ A +A VP + V + + G + +F+ A + +IIF+DE+D+ A+ ++ EAT L+ LL ++DGF +VVV+A TNR LD AL+ RFD I PD RQ+I + K Sbjct: 315 KLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMA-PSIIFIDEIDAIGKERGKGGALGGANDEREAT---LNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLK 474
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_YARLI (Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica GN=PEX6 PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15 Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = 3 Query: 84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPD-HENRQEI 500 +LF GPPGTGKT A+ IA + V +++ Y GESE + +VF A + ++F DE+DS A R ++ RI+S LL ++DG + V V+ ATNR LD AL+ RFD M+ G+ D HE +Q I Sbjct: 755 ILFYGPPGTGKTLLAKAIATTFSLNFFSVKGPELLNMYIGESEANVRRVFQKARD-AKPCVVFFDELDSVAPQRGNQGDSGGVMDRIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTI 899
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15 Identity = 60/209 (28.71%), Postives = 93/209 (44.50%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM-------SGRDIRDVCQQA 605 +P+ Y D+ + P+ + GPPGTGKT A+ A +A VP + V + + G + +F+LA + I+F+DE+D+ R + L+ LL ++DGF VV++A TNR LDPAL+ RFD I G PD + R I + + + SG D+ +VC +A Sbjct: 328 NPKQYQDLGAKI--------PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARK-NAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEA 527
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15 Identity = 60/209 (28.71%), Postives = 93/209 (44.50%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM-------SGRDIRDVCQQA 605 +P+ Y D+ + P+ + GPPGTGKT A+ A +A VP + V + + G + +F+LA + I+F+DE+D+ R + L+ LL ++DGF VV++A TNR LDPAL+ RFD I G PD + R I + + + SG D+ +VC +A Sbjct: 329 NPKQYQDLGAKI--------PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARK-NAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEA 528 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |