CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATD3A_XENLA (ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis GN=atad3-A PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 3 Query: 33 DIALETR-CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512 DIA+ TR K R +L GPPGTGKT A+ +A +G+ + V + E + KVF A G ++F+DE D+F R +E + E R L+ L + EQ K +++ A+N+ + D A+ R D ++ F LP E R+ + Y Sbjct: 326 DIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLY 484
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD3_XENTR (ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis GN=atad3 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 3 Query: 33 DIALETR-CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512 DIA+ TR K R +L GPPGTGKT A+ +A +G+ + V + E + KVF A G ++F+DE D+F R +E + E R L+ L + EQ K +++ A+N+ + D A+ R D ++ F LP E R+ + Y Sbjct: 326 DIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLY 484
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12 Identity = 53/162 (32.72%), Postives = 83/162 (51.23%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGV-PLMYVPLEVVMSKYYGESERLLGKVFSLANEL-----PNGA--IIFLDEVDSF-----AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 + +L GPPGTGKT AR I V ++ KY GESE + ++F+ A E PN II DE+D+ +VA +S +H+ +++ LL +IDG +Q ++VI TNR+ +D AL+ R + + LP+ + R +I + K Sbjct: 254 KGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGVHDT---VVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTK 412
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12 Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 3 Query: 60 FESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---------------------RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 + ++ P LF GPPGTGKT A+ ++ +A P +YV + G + + +F + + I+++DE+DS A R+ + + +L L +DG+++ +++I ATNR + LD A++ RFD I F P E R++I Sbjct: 373 YSNSYPMGYLFAGPPGTGKTLMAKAMSYEAETPYLYVEGSQFRCREEGVANARVDDLFKQIQNI-SPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDI 541
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11 Identity = 53/188 (28.19%), Postives = 84/188 (44.68%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ L GPPG GKT A+ +A +A VP + + + G + +F A I+++DE+D+ R + M + + L+ LL ++DG V+V+A+TNR LD AL+ R D + LP + R+EI Q+ K SG DI ++C +A Sbjct: 342 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEA 528
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11 Identity = 53/167 (31.74%), Postives = 81/167 (48.50%), Query Frame = 3 Query: 57 KFESNRPRAVLFEGPPGTGKTSCARVIANQA-GVPLMYVPLEVVMSKYYGESERLLGKVFS-------LANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 K + + +L GPPGTGKT AR ++ G V ++SKY G SE + +F L E + +I DE+DS R S + T +++ LL ++DG +Q ++VI TNR +D AL+ RF+ I LPD + R++I + K Sbjct: 304 KLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTK 470
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11 Identity = 60/208 (28.85%), Postives = 96/208 (46.15%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGV-PLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GA-----IIFLDEVDSF-----AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI-------AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIR 635 R +L GPPGTGKT AR I V ++ KY GESE + K+F+ A E GA II DE+D+ ++A S +H+ +++ LL ++DG EQ ++VI TNR+ +D AL+ R + + LPD R +I +Y K SG ++ + + A+ S +++++ Sbjct: 331 RGILLFGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQRGSMAGSSSVHDT---VVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAAQSSAMNRLVK 535
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11 Identity = 53/188 (28.19%), Postives = 84/188 (44.68%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ L GPPG GKT A+ +A +A VP + + + G + +F A I+++DE+D+ R + M + + L+ LL ++DG V+V+A+TNR LD AL+ R D + LP + R+EI Q+ K SG DI ++C +A Sbjct: 342 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEA 528
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PCH2_CAEEL (Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans GN=pch-2 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11 Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 3 Query: 69 NRPRAVLFEGPPGTGKTSCARVIANQAGVPL-----MYVPLEV----VMSKYYGESERLLGKVFSLANELPNG----AIIFLDEVDSFAVARDSEMHEA----TRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLP 476 N R +L GPPGTGKTS + +A + + V LE+ + SK++ ES +L+ K+F +EL + +DEV+S + R+S + R ++ LL QID + V+++ +N + LD AL+ R D + G P Sbjct: 170 NVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDELAEDEKCMVFVLIDEVESLGMCRESSSSRSEPSDAIRAVNALLTQIDRIRRRDNVLILCTSNLESTLDKALVDRADIVKNVGQP 322
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11 Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQ--AGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GA-----IIFLDEVDSFAVARDSE-----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 + +L GPPG GKT AR I A P + E+ ++KY GESE + K+F+ A E GA II DE+D+ R S +H+ +++ LL +IDG EQ ++VI TNR +D AL+ R + + GLPD + R +I Sbjct: 254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEI-LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT---VVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQI 406 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |