CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 70/186 (37.63%), Postives = 96/186 (51.61%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ L GPPGTGKT AR +A+Q + V ++ KY GES RL+ ++F+ A + IIF+DE+D+ R SE A R R L LL Q+DGF+ +V +I ATNR LDPAL+ R D I LP+ + R +I A KH +G D+R+VC +A Sbjct: 167 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKH-GEIDYEAIVKLSDGFNGADLRNVCTEA 350
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 70/186 (37.63%), Postives = 96/186 (51.61%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ L GPPGTGKT AR +A+Q + V ++ KY GES RL+ ++F+ A + IIF+DE+D+ R SE A R R L LL Q+DGF+ +V +I ATNR LDPAL+ R D I LP+ + R +I A KH +G D+R+VC +A Sbjct: 167 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKH-GEIDYEAIVKLSDGFNGADLRNVCTEA 350
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 70/186 (37.63%), Postives = 96/186 (51.61%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 P+ L GPPGTGKT AR +A+Q + V ++ KY GES RL+ ++F+ A + IIF+DE+D+ R SE A R R L LL Q+DGF+ +V +I ATNR LDPAL+ R D I LP+ + R +I A KH +G D+R+VC +A Sbjct: 167 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKH-GEIDYEAIVKLSDGFNGADLRNVCTEA 350
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491 R +L GPPG GKT A+ +A ++ + + SKY GE E+L+ +F++A EL +IIF+DEVDS R H+A+RR+ + L + DG + D +V+V+ ATNR Q+LD A++ RF + LP+ E R Sbjct: 374 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETR 512
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 67/204 (32.84%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK--HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 +PE+++ + + P+ VL GPPGTGKT A+ +A + + V ++ K+ GE +L+ VF LA E + IIF+DE+D+ A R + R R L LL ++DGF+ V +IAATNR LDPA++ RFD +I +PD + R EI + + + M G D++ VC +A Sbjct: 170 NPELFEKVGIVP--------PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLKGVDLREVAKIAENMVGADLKAVCTEA 364
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 67/204 (32.84%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK--HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 +PE+++ + + P+ VL GPPGTGKT A+ +A + + V ++ K+ GE +L+ VF LA E + IIF+DE+D+ A R + R R L LL ++DGF+ V +IAATNR LDPA++ RFD +I +PD + R EI + + + M G D++ VC +A Sbjct: 170 NPELFEKVGIVP--------PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLKNVDLREVAKLAENMVGADLKAVCTEA 364
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE Y+++ ++ P+ V+ GPPGTGKT A+ +ANQ + V ++ KY G+ +L+ ++F +A E +I+F+DE+D+ R +S +R + LL Q+DGF+ V VI ATNR + LDPALI R D I F LPD + ++ I + +SG DI+ +C +A Sbjct: 208 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 402
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE Y+++ ++ P+ V+ GPPGTGKT A+ +ANQ + V ++ KY G+ +L+ ++F +A E +I+F+DE+D+ R +S +R + LL Q+DGF+ V VI ATNR + LDPALI R D I F LPD + ++ I + +SG DI+ +C +A Sbjct: 208 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 402
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE Y+++ ++ P+ V+ GPPGTGKT A+ +ANQ + V ++ KY G+ +L+ ++F +A E +I+F+DE+D+ R +S +R + LL Q+DGF+ V VI ATNR + LDPALI R D I F LPD + ++ I + +SG DI+ +C +A Sbjct: 208 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 402
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE Y+++ ++ P+ V+ GPPGTGKT A+ +ANQ + V ++ KY G+ +L+ ++F +A E +I+F+DE+D+ R +S +R + LL Q+DGF+ V VI ATNR + LDPALI R D I F LPD + ++ I + +SG DI+ +C +A Sbjct: 207 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEA 401 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |