CK938587

Overview
NameCK938587
Unique NameCK938587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:132..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.255e-55
Identity = 113/262 (43.13%), Postives = 159/262 (60.69%), Query Frame = 1
Query:  100 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG 879
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+            +  +N    ++ VDE TI +  ILG T TG+F+D+  L+DL+   N     +  IHVD ASG    PF+ P LEWDFRLP V SIN SGHKYGLVY GVG
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVG 282          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.948e-53
Identity = 113/271 (41.70%), Postives = 157/271 (57.93%), Query Frame = 1
Query:  106 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF-XXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT----KKNEETGWDTPIHVDAASGGFIAPF--------LYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG 879
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL  RC++M+A L++     D+  +G  T GSSEAIML GLA K++W+ + K  GK   KPNI+  +  QV  EKF RYF             +++++P    + VDENTI    ILG+T TG  E+V+ + D+L+    K  + +  D PIH D ASGGFI PF         Y    W F  P V S+N SGHK+GL   G+G
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPFGFEKEHMKAYGMERWGFNHPRVVSMNTSGHKFGLTTPGLG 327          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_UNCMA (L-tyrosine decarboxylase OS=Uncultured methanogenic archaeon RC-I GN=mfnA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 60/225 (26.67%), Postives = 99/225 (44.00%), Query Frame = 1
Query:  187 PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL 861
            P   + S + T   P   K     +N N  D   +P T ++++RC+ +I  L + P A    + G    G+   I     A + K   +R+         NIV   +    +EK A                   +P +   L+D+NTI + A+ G+T  G+ + ++ +  L  +       D  +HVDAA GGF+ PF+    ++DF +P V+SI +  HK GL
Sbjct:   24 PYGRVLSSMCTNPHPIAVKAHQEFVNTNLGDPKLFPGTADIEHRCIGLIGDLLHLPAATGYISTG----GTESNIQALRTAIQMKHTDRRRA--------NIVVPESAHYSFEK-ASQMLGIAIRRAPLDDLLRADPSEMAALIDKNTIALVAVAGTTEFGQIDPIEEIGRLAQEH------DLYLHVDAAFGGFVIPFMDRPAKFDFEIPGVQSITIDPHKMGL 229          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_METLZ (L-tyrosine decarboxylase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=mfnA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.102e-14
Identity = 62/198 (31.31%), Postives = 94/198 (47.47%), Query Frame = 1
Query:  268 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL 861
            N  D   +P TT++++R V+ +  L + P A      G GT  + +AI +A         +K K + K    PNIV  A+    ++K                 Y V +  K  E+VD+NTI V+AI G+T  G  +DV+ +  +  +       D   HVDAA GG + PFL     +DF +P V SI++  HK G+
Sbjct:   51 NLGDPGLFPGTTKIEDRLVHSLGELMHHPGAGGYATSG-GTESNLQAIRIA---------KKLKPEIK---NPNIVVPASAHFSFDKTCDILGLEMRTVPYGKNYTV-DCDKMAEMVDKNTISVSAIAGTTEYGMIDDVERIAKIALEN------DLFFHVDAAFGGMVIPFLPNPAPFDFEVPGVSSISLDPHKMGM 228          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_METTP (L-tyrosine decarboxylase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=mfnA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 65/252 (25.79%), Postives = 104/252 (41.27%), Query Frame = 1
Query:  109 FKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVE-LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL 861
            +  P+  + ++    ++ +    D  P   L S + T   P   +     +  N  D   +P T E++ R V ++  L     A    + G GT  + +A+  A           R   G+     NIV   +    ++K A                 V   V  VE L+D+ T+C+  I G+T  G+ + +  L +L  +         P+HVDAA GGF+ PFL  D  WDFR   V+SI +  HK G+
Sbjct:    2 YTFPEKGLSEDMVTDLLKEMRSRDC-PYDRLLSTMCTRPHPVAVRAYSMFLETNLGDPGLFPGTAEIERRVVGILGSLLGCSDATGYVSTG-GTESNIQAVRAA-----------RNSSGRR--DGNIVVPRSAHFSFDKIADLLNLEVRKAELDESLRV--DVGDVERLIDDRTVCLVGIAGTTEFGQVDPIGDLSELAIENG------IPLHVDAAFGGFVLPFLEKDCMWDFRAEGVQSITIDPHKMGM 230          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_METHJ (L-tyrosine decarboxylase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=mfnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 57/198 (28.79%), Postives = 86/198 (43.43%), Query Frame = 1
Query:  268 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL 861
            N  D   +P T  L++R +   A L++ P A   T  G GT  + + +                ++ K   +PNI+  A+    +EK A                Y M    A EL+D+NT C+  + G+T  G  + +  L  L  ++         +HVDAA GG++ PFL     +DF +P V SI V  HK GL
Sbjct:   51 NLGDPGLFPGTATLEDRLIRWFADLYHEPSAGGCTTSG-GTESNIQVLRFC-------------KKTKNVKEPNIIVPASAHFSFEK-ACGMMDIEMRVVPVDEQYRMKTDAAGELIDKNTCCIVGVAGTTEYGMTDPIPALGKLAEQEGVH------LHVDAAFGGYVLPFLDDAPPFDFSVPGVGSIAVDPHKMGL 227          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: SGPL_YEAST (Sphingosine-1-phosphate lyase OS=Saccharomyces cerevisiae GN=DPL1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 55/207 (26.57%), Postives = 92/207 (44.44%), Query Frame = 1
Query:  268 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEW-DFRLPLVKSINVSGHKYGLVYAG 873
            N +  D +P   ++++  V+M+  +FN P     T  G  T G +E+++LA L+ K      R        +P I+        ++K A YF             Y ++  K  + +++NTI +     +   G  +D++ L  +  K      +  P+HVD+  G FI  F+    Y +L   DFR+P V SI+   HKYG    G
Sbjct:  195 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYALHHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTILLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKG 387          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_THEGJ (L-tyrosine decarboxylase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=mfnA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 60/220 (27.27%), Postives = 94/220 (42.73%), Query Frame = 1
Query:  217 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLV 864
            T+  P   K++   I++N  D   +  + +++   V M+++L        K   G    G +EA +LA  AF+              +KP ++   +    + K                 Y V N     E + +NTI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +  HK G+V
Sbjct:   37 TYPHPFAVKIITEFIDRNLGDPGLHIGSRKVEEEAVEMLSNLLGL-----KKGYGHIVSGGTEANILAVRAFRNL---------AGVEKPELILPKSAHFSFIKAGEMLGVKLIWAELNEDYTV-NVRDVEEKITDNTIGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYDIPDFDFRLKGVKSITIDPHKMGMV 235          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_METKA (L-tyrosine decarboxylase OS=Methanopyrus kandleri GN=mfnA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 65/217 (29.95%), Postives = 96/217 (44.24%), Query Frame = 1
Query:  229 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAH-LFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVE-LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL---YPDLEWDFRLPLVKSINVSGHKYGLV 864
            P   +  +A ++ N  D   +P     +  C+  +A  L + P  ++  A G    G +EA +LA  A +     +            I+  A     +EK AR              Y V   V AV+ L+  +T  +  I+G+T TG  +D++ L D+     E+ G   P+HVDAA GGF APFL   YP   + F L  V S+ V  HK GLV
Sbjct:   24 PVAAEAFVAGLHVNLGDPYLFPNAYRAERECIGWLAETLLDHPAPEE--AEGSIVSGGTEANILAAYAAREVTGGRE-----------IIVPATRHFSFEKAARMLRMKLVEAPLRSDYTV--DVDAVQDLISRDTALIVGIVGTTETGSVDDIEALSDVA----EDHG--VPLHVDAAFGGFTAPFLREEYPLPRFGFDLEAVVSVTVDPHKMGLV 219          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_METAC (L-tyrosine decarboxylase OS=Methanosarcina acetivorans GN=mfnA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 57/208 (27.40%), Postives = 89/208 (42.79%), Query Frame = 1
Query:  259 INKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVAD-------DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL 861
            I  N  D+  +   + L+   V M+  L + P  D       + +A G  T G +E+ + A    K      +KE       PNIV   +    ++K A               + V +      L+D NTI +  I G+T  G+ + +  L ++  +       +  +H+DAA GGF+ PFL     +DF+LP V SI V  HK GL
Sbjct:   48 IEANLGDLGLFAGASRLEQEVVGMLGELLHAPSIDVPFGGSCESSACGYLTTGGTESNIQAVRGMKNLVTTGKKELK---GAPNIVIPESAHFSFDKVADMMGIEVRRASLDSEFRV-DMASIESLIDANTIGLIGIAGNTEFGQIDPIDKLSEIALEN------ELFLHIDAAFGGFVIPFLEKPQPFDFKLPGVTSIAVDPHKMGL 245          
The following BLAST results are available for this feature:
BLAST of CK938587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DCEA_LISMO1.255e-5543.13Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCE_YEAST9.948e-5341.70Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
MFNA_UNCMA1.075e-1426.67L-tyrosine decarboxylase OS=Uncultured methanogeni... [more]
MFNA_METLZ9.102e-1431.31L-tyrosine decarboxylase OS=Methanocorpusculum lab... [more]
MFNA_METTP1.006e-1225.79L-tyrosine decarboxylase OS=Methanosaeta thermophi... [more]
MFNA_METHJ8.519e-1228.79L-tyrosine decarboxylase OS=Methanospirillum hunga... [more]
SGPL_YEAST1.113e-1126.57Sphingosine-1-phosphate lyase OS=Saccharomyces cer... [more]
MFNA_THEGJ2.479e-1127.27L-tyrosine decarboxylase OS=Thermococcus gammatole... [more]
MFNA_METKA2.479e-1129.95L-tyrosine decarboxylase OS=Methanopyrus kandleri ... [more]
MFNA_METAC2.479e-1127.40L-tyrosine decarboxylase OS=Methanosarcina acetivo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_H11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938587 ID=CK938587; Name=CK938587; organism=Citrus sinensis; type=EST; length=879bp
GGGGAAAAAACAAAAACAAAAATGGTGATTTCAACAANNNNAACAGACTC
CAGGGAGATTTTGAACTCCACATTTGCTTCAAGATATGTCCGTGCTGCTA
TTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAAGGAGGCAGCCTAT
CAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCAAGGCTGAACTT
GGCATCTTTTGTGACCACTTGGATGGAGCCCGAGTGTGATAAGCTTGTCA
TGGCTTCGATTAATAAAAACTATGTTGACATGGATGAATACCCTGTAACC
ACAGAGCTCCAGAATCGGTGTGTGAATATGATTGCCCACCTATTTAATAC
TCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGACTGTAGGTTCAT
CAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTGGCAGCAG
AAGAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAGTCACTGG
AGCTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTTG
AGCTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTG
AAAGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCT
GGGATCAACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCATGACC
TCCTCACCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTT
GATGCTGCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGA
ATGGGATTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACA
AGTACGGCCTTGTATATGCAGGTGTTGGC
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