CK938587

Overview
NameCK938587
Unique NameCK938587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:132..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: SGPL_DROME (Sphingosine-1-phosphate lyase OS=Drosophila melanogaster GN=Sply PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 62/262 (23.66%), Postives = 110/262 (41.98%), Query Frame = 1
Query:  115 MPDNSMPKEAAYQVINDELMLDG-NPRLNLASFVTTWMEPECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAG 873
            +P+  + KE   +++++ L     N R    S      +P+  +LV     K    N +  D +P   +++   V M  +LF+     +  + G  T G +E+I++A  A++         + K   +PNIV    V   ++K  +YF             Y ++  K    ++ NTI +     +   G  +D++ +  L  K      +D P+HVDA  G F+   +    Y    +DF +  V SI+   HKYG    G
Sbjct:  103 LPEKGLSKEEILRLVDEHLKTGHYNWRDGRVSGAVYGYKPDLVELVTEVYGKASYTNPLHADLFPGVCKMEAEVVRMACNLFH----GNSASCGTMTTGGTESIVMAMKAYR-----DFAREYKGITRPNIVVPKTVHAAFDKGGQYFNIHVRSVDVDPETYEVDIKKFKRAINRNTILLVGSAPNFPYGTIDDIEAIAALGVK------YDIPVHVDACLGSFVVALVRNAGYKLRPFDFEVKGVTSISADTHKYGFAPKG 349          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_METB6 (L-tyrosine decarboxylase OS=Methanoregula boonei (strain 6A8) GN=mfnA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 59/205 (28.78%), Postives = 90/205 (43.90%), Query Frame = 1
Query:  268 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL--VYAGV 876
            N  D   +P T  L+   V  +  LF+      K A G  T G +E+ + A    K           +P   PN+V   +V   ++K                   +M   KA EL+D+NTIC+  + G+T  G  + +  L  +  ++      D  +HVDAA GG + PFL   + +DF LP V ++ V  HK G+  + AGV
Sbjct:   51 NLGDPGLFPGTAALERLLVERLGTLFH-----HKNAGGYATSGGTESNIQALRLAKAL---------RPGSSPNVVLPESVHFSFKKACDLLSLEMRSVPLGTDRRIMAD-KAAELIDKNTICLVGVAGTTEYGMVDPIADLAKIAAQQ------DIFLHVDAAFGGMVIPFLPKPVPFDFALPGVTTLAVDPHKMGMSTIPAGV 234          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_PYRKO (L-tyrosine decarboxylase OS=Pyrococcus kodakaraensis GN=mfnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 63/221 (28.51%), Postives = 97/221 (43.89%), Query Frame = 1
Query:  217 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVEL-VDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLV 864
            T+  P   K+VM  I++N  D   +  + +++   V+M+A+L        +   G    G +EA +LA  A +              +KP ++   +    + K A               Y V   VK VE  + + TI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +  HK G+V
Sbjct:   37 TYPHPFAVKVVMKYIDRNLGDPGLHIGSQKIEKEAVDMLANLLGL-----EKGYGHIVSGGTEANILAVRAMRNL---------AGIEKPELILPESAHFSFIKAAEMLGVKLVWAELNDDYTVN--VKDVEKKITDRTIGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYEIPDFDFRLKGVKSITIDPHKMGMV 235          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_PYRAB (L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=mfnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 63/256 (24.61%), Postives = 109/256 (42.58%), Query Frame = 1
Query:  112 KMPDNSMPKEAAYQVINDELMLDGN-PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVEL-VDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGL 861
            K P+  +P+E    ++ D+  +D       +   + T       ++    I++N  D   +P T +++   + M++ L +      +   G    G +EA +LA  AF+     +R         P ++   +    + K                 Y V   VK VE  + +NTI +  I G+T  G  +D+  L DL  +      +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+
Sbjct:    3 KFPEKGLPREEVLNLLEDKTKVDLTFSSGKILGSMCTMPHELAIEVFARYIDRNLGDPGLHPGTRKIEEEVIEMLSDLLHL-----EKGYGHIVSGGTEANILAVRAFRNISDAER---------PELILPKSAHFSFIKAGEMLGVKLVWAELKQDYAV--DVKDVEAKISDNTIGIVGIAGTTGLGVVDDIPALSDLARE------YGIPLHVDAAFGGFVIPFAKSLGYDLPDFDFKLKGVESITIDPHKMGM 236          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_METMJ (L-tyrosine decarboxylase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=mfnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 63/250 (25.20%), Postives = 107/250 (42.80%), Query Frame = 1
Query:  115 MPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVE-LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL 861
            M +   P+E  +  ++ +   D   R N+ S + T   P   +     +  N  D   +P T  L++  V  +  L + P A      G GT  + +A  +A          K+ +  K    PN+V  A+    + K                G+ +    +AV+ L+D NT+ +  ++G+T  G  + +  L ++   +N        +HVDAA GG + PFL   + +DF LP V SI+V  HK G+
Sbjct:    1 MREVGCPEEDLFSFLSSKRREDLGYR-NILSSMCTPPHPVAARAHAMFLETNLGDPGLFPGTAALEDLLVRRLGTLMHLPDAGGYATSG-GTESNIQAFRIA----------KKLKSAK---SPNVVVPASSHFSFTKACDILGLEMRTVPLDAGFRM--ETEAVDGLIDHNTVALVGVVGTTEYGMVDPISRLSEIALDRN------VFLHVDAAFGGMVVPFLDRPVPFDFSLPGVSSISVDPHKMGM 227          
BLAST of CK938587 vs. ExPASy Swiss-Prot
Match: MFNA_PYRHO (L-tyrosine decarboxylase OS=Pyrococcus horikoshii GN=mfnA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 65/256 (25.39%), Postives = 108/256 (42.19%), Query Frame = 1
Query:  112 KMPDNSMPKEAAYQVINDELMLDGN-PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVEL-VDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGL 861
            K P   +PKE   ++IN++   D       +   + T       ++    I++N  D   +P T +++   + MI+ L +      +   G    G +EA +LA  AF+              +KP ++   +    + K                 Y V   V+ VE  + +NTI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+
Sbjct:    2 KFPRIGLPKEKVIELINEKTKKDLTFSSGKILGSMCTMPHDLAIEVYTKYIDRNLGDPGLHPGTRKIEEEVIEMISDLLHL-----EKGHGHIVSGGTEANILAVRAFRNL---------SDVEKPELILPKSAHFSFIKAGEMLGVKLVWAELNPDYTV--DVRDVEAKISDNTIGIVGIAGTTGLGVVDDIPALSDLARD------YGIPLHVDAAFGGFVIPFAKELGYELPDFDFKLKGVQSITIDPHKMGM 235          
The following BLAST results are available for this feature:
BLAST of CK938587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
SGPL_DROME4.228e-1123.66Sphingosine-1-phosphate lyase OS=Drosophila melano... [more]
MFNA_METB64.228e-1128.78L-tyrosine decarboxylase OS=Methanoregula boonei (... [more]
MFNA_PYRKO5.522e-1128.51L-tyrosine decarboxylase OS=Pyrococcus kodakaraens... [more]
MFNA_PYRAB5.522e-1124.61L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=m... [more]
MFNA_METMJ5.522e-1125.20L-tyrosine decarboxylase OS=Methanoculleus marisni... [more]
MFNA_PYRHO9.419e-1125.39L-tyrosine decarboxylase OS=Pyrococcus horikoshii ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_H11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938587 ID=CK938587; Name=CK938587; organism=Citrus sinensis; type=EST; length=879bp
GGGGAAAAAACAAAAACAAAAATGGTGATTTCAACAANNNNAACAGACTC
CAGGGAGATTTTGAACTCCACATTTGCTTCAAGATATGTCCGTGCTGCTA
TTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAAGGAGGCAGCCTAT
CAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCAAGGCTGAACTT
GGCATCTTTTGTGACCACTTGGATGGAGCCCGAGTGTGATAAGCTTGTCA
TGGCTTCGATTAATAAAAACTATGTTGACATGGATGAATACCCTGTAACC
ACAGAGCTCCAGAATCGGTGTGTGAATATGATTGCCCACCTATTTAATAC
TCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGACTGTAGGTTCAT
CAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTGGCAGCAG
AAGAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAGTCACTGG
AGCTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTTG
AGCTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTG
AAAGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCT
GGGATCAACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCATGACC
TCCTCACCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTT
GATGCTGCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGA
ATGGGATTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACA
AGTACGGCCTTGTATATGCAGGTGTTGGC
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