CK938586

Overview
NameCK938586
Unique NameCK938586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12214 contig Csv1_Contig12214:567..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938586 vs. ExPASy Swiss-Prot
Match: HPPA1_RHILT (Pyrophosphate-energized proton pump 1 (Fragment) OS=Rhizobium leguminosarum bv. trifolii GN=hppA1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  217 GSAALVSLALFGAFVSRAAISTVD----------------VLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG 582
            GSA L +L LF A+ +  +    +                +  P V  GL+ G ++PY F  + M +VG AA  +VEEVRRQF   PG+M GT KPDY   V + T A+I+EM+ P  L +L PL+V  +FGV  +SG
Sbjct:    1 GSAGLGALVLFAAYANDLSYFAANGDTYPYFKDIGEISFSLANPYVVAGLLFGGLIPYLFGGIAMTAVGKAASAIVEEVRRQFREKPGIMAGTEKPDYGRAVDLLTKAAIREMVIPSLLPVLAPLVV--YFGVLLISG 136          
The following BLAST results are available for this feature:
BLAST of CK938586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA1_RHILT4.218e-1939.86Pyrophosphate-energized proton pump 1 (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938586 ID=CK938586; Name=CK938586; organism=Citrus sinensis; type=EST; length=881bp
GGGAGTTTTGCTGCCATGTATGGTATTGCAGTTGCCGCCCTTGGAATGCT
AAGCACCATAGCTACTGGATTGGCTATTGATGCATATGGTCCCATCAGTG
ACAATGCTGGAGGCATTGCTGAGATGGCAGGCATGAGCCACAGAATCAGA
GAGAGAACTGATGCTCTTGATGCTGCAGGAAACACCACCGCAGCTATTGG
AAAGGGTTTCGCCATTGGTTCTGCAGCTCTTGTGTCGCTAGCCCTCTTTG
GTGCCTTTGTGAGCCGTGCAGCTATTTCAACTGTTGATGTGTTGACTCCA
AAAGTGTTTATTGGTTTGATTGTTGGTGCTATGCTTCCTTACTGGTTCTC
TGCCATGACAATGAAGAGTGTGGGAAGTGCAGCTCTTAAAATGGTTGAGG
AAGTGCGCAGGCAATTTAACACCATCCCTGGTCTTATGGAAGGCACTGCC
AAACCTGATTATGCTACCTGTGTTAAGATCTCCACCGATGCATCCATCAA
AGAGATGATCCCACCTGGTGCCCTTGTCATGCTTACACCCCTTATTGTTG
GTATCTTTTTTGGCGTGGAAACTCTCTCTGGGGTCCTTGCCGGTTCCCTT
GTCTCAGGTGTACAGATTGCTATCTCTGCATCCAACACTGGTGGTGCCTG
GGATAACGCCAAGAAGTACATTGAGGCTGGCGCTTCAGAGCACGCCAGAA
CTCTTGGTCCAAAAGGATCAGATCCACACAAGGCTGCGGTCATTGGTGAC
ACAATTGGGGATCCATTGAAGGACACATCTGGACCATCACTTAACATCCT
AATCAAGCTAATGGCAGTGGAATCACTTGTTTTTGCTCCCTTTTTTGCAC
ACACGGTGGCTTGCTTTTCAAGATATGGAAT
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