CK937441

Overview
NameCK937441
Unique NameCK937441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10885 contig Csv1_Contig10885:11..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937441 vs. ExPASy Swiss-Prot
Match: SFGH2_ECO24 (S-formylglutathione hydrolase yeiG OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yeiG PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.935e-50
Identity = 103/193 (53.37%), Postives = 128/193 (66.32%), Query Frame = 2
Query:   95 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNK 670
            +   + F G+ +R++H S+TL C M F I+           PVLYWLSGLTC DENF  K+GAQR A+  G+ L+ PDTSPRG  V  + D +D G GAGFYLNATQ  W  ++RMYDY+  ELP L+   F    + R +I GHSMGGHGAL + LKN  KY SVSAFAPI NP + PWG KAF++YLG +K
Sbjct:    4 LEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPP-PVLYWLSGLTCNDENFTIKAGAQRVAAELGIVLVMPDTSPRGEQVAND-DGYDLGQGAGFYLNATQPPWATHYRMYDYLRDELPALVQSQFNV--SDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDK 192          
BLAST of CK937441 vs. ExPASy Swiss-Prot
Match: SFGH2_ECOSM (S-formylglutathione hydrolase yeiG OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yeiG PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.006e-50
Identity = 103/187 (55.08%), Postives = 125/187 (66.84%), Query Frame = 2
Query:  113 FGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNK 670
            F G+ +R++H S+TL C M F I+           PVLYWLSGLTC DENF  K+GAQR A+  G+ L+ PDTSPRG  V  + D +D G GAGFYLNATQ  W  ++RMYDY+  ELP L+   F    + R +I GHSMGGHGAL + LKN  KY SVSAFAPI NP + PWG KAF+ YLG +K
Sbjct:   10 FEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPP-PVLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEQVAND-DGYDLGQGAGFYLNATQPPWATHYRMYDYLRDELPALVQSQFNV--SDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSIPWGIKAFSRYLGEDK 192          
BLAST of CK937441 vs. ExPASy Swiss-Prot
Match: SFGH2_SHIDS (S-formylglutathione hydrolase yeiG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yeiG PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.902e-49
Identity = 102/193 (52.85%), Postives = 125/193 (64.77%), Query Frame = 2
Query:   95 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNK 670
            +   + F G+ +R++H S+TL C M F I+           PVLYWLSGLTC DENF  K+GAQR A+  G+ L+ PDTSPRG  V    D +D G  AGFYLNATQ  W  ++RMYDY+  ELP L+   F    + R +I GHSMGGHGAL + LKN  KY SVSAFAPI NP + PWG KAF+ YLG +K
Sbjct:    4 LEEHRCFQGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPP-PVLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKV-ANGDGYDLGQSAGFYLNATQPPWATHYRMYDYLRDELPALVQSQFNV--SDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSVPWGIKAFSRYLGEDK 192          
BLAST of CK937441 vs. ExPASy Swiss-Prot
Match: SFGH_HAEIN (S-formylglutathione hydrolase OS=Haemophilus influenzae GN=HI0184 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.245e-49
Identity = 97/193 (50.26%), Postives = 131/193 (67.88%), Query Frame = 2
Query:   95 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNK 670
            I   ++FGG  + + H + TL C M F +Y            V+YWLSGLTCT++NFI KSG QR A+   V ++APDTSPRG  V  +A ++D G GAGFYLNAT++ W  N++MYDY++ ELP L+  NFP     + SI GHSMGGHGAL + L+N ++Y+SVSAF+PI +P   PWG+KAF+ YLG ++
Sbjct:    4 IEQHQIFGGSQQVWAHNAQTLQCEMKFAVYLPNNPENR-PLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDA-AYDLGQGAGFYLNATEQPWATNYQMYDYILNELPDLIEANFPT--NGKRSIMGHSMGGHGALVLALRNRERYQSVSAFSPILSPSLVPWGEKAFSAYLGEDR 192          
BLAST of CK937441 vs. ExPASy Swiss-Prot
Match: SFGH_PARDP (S-formylglutathione hydrolase OS=Paracoccus denitrificans (strain Pd 1222) GN=fghA PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 94/194 (48.45%), Postives = 126/194 (64.95%), Query Frame = 2
Query:   95 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKA 673
            +S ++ FGG    ++H S   G  M F IY         K PVL++LSGLTCT EN + K+GAQ  A+  G+A+I PDTSPRG  V  + +++D G GAGFY++AT+  W  ++RM+ YV  ELP+L+  NFP L+     I GHSMGGHGALTI +   ++Y+SVSAFAPI +P    WG+K F  YLG +KA
Sbjct:    8 VSENRSFGGIQGVYRHQSQATGTPMTFAIYLPPDARHG-KVPVLWYLSGLTCTHENAMTKAGAQEWAAEYGIAVIFPDTSPRGEGVAND-ETYDLGQGAGFYVDATEAPWAPHFRMWHYVTHELPELVFNNFP-LDREAQGITGHSMGGHGALTIAMTFPERYRSVSAFAPIAHPSESDWGRKQFAAYLGDDKA 198          
BLAST of CK937441 vs. ExPASy Swiss-Prot
Match: SFGH_YEAST (S-formylglutathione hydrolase OS=Saccharomyces cerevisiae GN=YJL068C PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.331e-39
Identity = 93/201 (46.27%), Postives = 121/201 (60.20%), Query Frame = 2
Query:  116 GGYNKRFKHFSTTLGCSMNFHIY-----FXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEAD-SWDFGVGAGFYLNATQEKW-KNWRMYDYVVKELPKLLSENFPQLETSR------ASIFGHSMGGHGALTIYLKNLD--KYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKA 673
            GG   +  H S +   SMN +IY     +        + P +++LSGLTCT +N   K+  Q  A   G A++ PDTSPRG  V  + + SWDFG GAGFYLNATQE + ++++MYDY+ KELP+ L  +F +    +       +I GHSMGG+GA+  YLK     +YKS SAFAPI NP N PWGQKAF  YLG  KA
Sbjct:   11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKA 211          
The following BLAST results are available for this feature:
BLAST of CK937441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
SFGH2_ECO242.935e-5053.37S-formylglutathione hydrolase yeiG OS=Escherichia ... [more]
SFGH2_ECOSM5.006e-5055.08S-formylglutathione hydrolase yeiG OS=Escherichia ... [more]
SFGH2_SHIDS1.902e-4952.85S-formylglutathione hydrolase yeiG OS=Shigella dys... [more]
SFGH_HAEIN3.245e-4950.26S-formylglutathione hydrolase OS=Haemophilus influ... [more]
SFGH_PARDP9.144e-4448.45S-formylglutathione hydrolase OS=Paracoccus denitr... [more]
SFGH_YEAST2.331e-3946.27S-formylglutathione hydrolase OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_G04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937441 ID=CK937441; Name=CK937441; organism=Citrus sinensis; type=EST; length=675bp
CGCGCCGGGNNNTGAAAGAACAAAGATCGTACACACACAGGGGCGAGCNN
NACACAATCAATCACAGAGAAAAATGGAGACGAAGCCGACAGAGATAAGC
AGTTCTAAGATGTTCGGTGGATACAACAAAAGATTCAAGCATTTCAGTAC
AACACTGGGCTGCTCCATGAATTTCCACATCTACTTCCCTCCTTCTTCTT
CTCCATCCTACAAATTCCCTGTGCTTTACTGGCTCTCTGGTCTTACCTGC
ACTGATGAAAATTTTATAGCTAAGTCAGGAGCTCAACGTGCTGCTTCCGC
TGAAGGTGTGGCTCTGATTGCCCCTGATACATCTCCAAGAGGCCTGAATG
TGGAAGGAGAGGCAGATAGCTGGGATTTTGGTGTAGGTGCTGGATTTTAT
CTTAATGCTACACAGGAGAAGTGGAAGAACTGGCGTATGTATGACTATGT
TGTCAAGGAATTGCCCAAACTTCTGAGTGAAAATTTTCCACAGCTTGAAA
CTTCTCGAGCATCCATATTTGGTCACTCAATGGGTGGGCATGGTGCTTTG
ACAATCTATCTGAAAAATCTTGACAAGTATAAGTCTGTATCTGCCTTTGC
TCCAATTTGCAATCCTGTCAACTGTCCCTGGGGTCAGAAGGCTTTTACAA
ATTATCTTGGTAGTAACAAAGCTGA
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