CK937435

Overview
NameCK937435
Unique NameCK937435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937435_ssr74 microsatellite CK937435_ssr74:74..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2029 contig Csv1_Contig2029:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_DICDI (Eukaryotic translation initiation factor 4E OS=Dictyostelium discoideum GN=eif4e PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.376e-36
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSFH 591
            H L+ +W+ W+D  S       W  S++KV +FD+VE+FWC++  +   S L   + +HLFK  IEPKWE      GGKW V    K+  D  WL+++MA +GE FD +DEICG+V + R+  DK+++WTKTA +E A   +G   K+IL++   I Y+ H
Sbjct:   74 HPLQNRWSLWYDYQSGKINPEHWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSSYHLFKDDIEPKWEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVYNSRKNGDKISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPH 234          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_XENLA (Eukaryotic translation initiation factor 4E OS=Xenopus laevis GN=eif4e PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.859e-35
Identity = 73/170 (42.94%), Postives = 100/170 (58.82%), Query Frame = 1
Query:   91 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            P Q   H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L    D+ LFK GIEP WED +   GG+W +T N   R+ +LD  WLET+M LIGE FDE +D++CG V +VR + DK+A+WT    N+ A   IG+ +KE L L  ++   +
Sbjct:   27 PDQYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMSGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRNDLDRFWLETLMCLIGESFDEHSDDVCGAVVNVRAKGDKIAIWTTEFENKDAVTHIGRVYKERLGLPAKVVIGY 193          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_HUMAN (Eukaryotic translation initiation factor 4E OS=Homo sapiens GN=EIF4E PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.747e-34
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L    D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D++CG V +VR + DK+A+WT    N  A   IG+ +KE L L  +I   +
Sbjct:   37 HPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_RAT (Eukaryotic translation initiation factor 4E OS=Rattus norvegicus GN=Eif4e PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.893e-34
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L    D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D++CG V +VR + DK+A+WT    N  A   IG+ +KE L L  +I   +
Sbjct:   37 HPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_RABIT (Eukaryotic translation initiation factor 4E OS=Oryctolagus cuniculus GN=EIF4E PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.893e-34
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L    D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D++CG V +VR + DK+A+WT    N  A   IG+ +KE L L  +I   +
Sbjct:   37 HPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_MOUSE (Eukaryotic translation initiation factor 4E OS=Mus musculus GN=Eif4e PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.893e-34
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L    D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D++CG V +VR + DK+A+WT    N  A   IG+ +KE L L  +I   +
Sbjct:   37 HPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_BOVIN (Eukaryotic translation initiation factor 4E OS=Bos taurus GN=EIF4E PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.893e-34
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L    D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D++CG V +VR + DK+A+WT    N  A   IG+ +KE L L  +I   +
Sbjct:   37 HPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETVLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGY 197          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4EA_DANRE (Eukaryotic translation initiation factor 4E-1A OS=Danio rerio GN=eif4e1a PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.410e-33
Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L    D+ LFK GIEP WED     GG+W +T     R+A+LD  WLET++ L+GE FD+ +D++CG V ++R + DK+A+WT    N+ A + IG+ +KE L +  ++   +
Sbjct:   35 HPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMSGCDYSLFKDGIEPMWEDERNKRGGRWLITLSKQQRRADLDRFWLETLLCLVGEAFDDHSDDVCGAVVNIRTKGDKIAIWTTDYENKDAIVHIGRVYKERLGVPPKVIIGY 195          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_APLCA (Eukaryotic translation initiation factor 4E OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.205e-32
Identity = 68/164 (41.46%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L+  W  WF    K +    W  ++R + TFDTVE+FW LY      S+L    D+ +FK GI+P WED +   GG+W +  N   R+ +LD  WLET++ LIGE FDE ++EICG   ++R + DKL LWT+ A    A   IG K KE L +  +I   F
Sbjct:   35 HPLQNSWAMWFFKNDKSRD---WKDNLRVITTFDTVEDFWGLYNHTLPASKLQSGCDYSVFKAGIQPMWEDAQNKKGGRWLINLNKTQRQTHLDDFWLETLLCLIGEGFDEHSEEICGATVNIRNKGDKLGLWTRDAQKTEATKKIGIKLKESLSVPPKIVIGF 195          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_DROME (Eukaryotic translation initiation factor 4E OS=Drosophila melanogaster GN=eIF-4E PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 63/165 (38.18%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNR--KANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDL--TDRITYSFH 591
            H L   WT W+    + K   +W     ++ +FDTVE+FW LY  I  PS + + +D+ LFK  I P WED     GG+W +T N+  K +LD +WL+ ++ LIGE FD +D+ICG V ++R + +K+++WT    NE A + IG K ++ L L   + + Y  H
Sbjct:   81 HPLMNVWTLWYLENDRSK---SWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLH 242          
The following BLAST results are available for this feature:
BLAST of CK937435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E_DICDI1.376e-3641.61Eukaryotic translation initiation factor 4E OS=Dic... [more]
IF4E_XENLA9.859e-3542.94Eukaryotic translation initiation factor 4E OS=Xen... [more]
IF4E_HUMAN3.747e-3442.68Eukaryotic translation initiation factor 4E OS=Hom... [more]
IF4E_RAT4.893e-3442.68Eukaryotic translation initiation factor 4E OS=Rat... [more]
IF4E_RABIT4.893e-3442.68Eukaryotic translation initiation factor 4E OS=Ory... [more]
IF4E_MOUSE4.893e-3442.68Eukaryotic translation initiation factor 4E OS=Mus... [more]
IF4E_BOVIN4.893e-3442.68Eukaryotic translation initiation factor 4E OS=Bos... [more]
IF4EA_DANRE5.410e-3340.24Eukaryotic translation initiation factor 4E-1A OS=... [more]
IF4E_APLCA1.205e-3241.46Eukaryotic translation initiation factor 4E OS=Apl... [more]
IF4E_DROME5.981e-3238.18Eukaryotic translation initiation factor 4E OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_F07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937435 ID=CK937435; Name=CK937435; organism=Citrus sinensis; type=EST; length=663bp
GGGGGGGAAAAAAATATAATTAATAGAAACAAAGAAGAGAGAGATATGGC
AACAAGTGAGGAGGCAAGCGCGACGGCGGCGGCGGAGGTGCCGCCGCAAT
CACAGCCGCACAAGCTCGAGAGAAAATGGACGTTTTGGTTCGACAACATA
TCAAAGCCCAAACAGGGCGCCGCGTGGGGCTCCTCCATGCGCAAAGTCTA
CACCTTCGACACTGTCGAAGAATTTTGGTGTTTGTATGAACAGATATTCA
AGCCAAGCCGGTTGCCAATGAATGCGGATTTCCATTTGTTCAAAACTGGG
ATAGAACCAAAGTGGGAAGATCCTGAGTGTGCGAATGGAGGAAAGTGGTC
GGTCACTAGCAACAGGAAGGCTAACCTTGATACCATGTGGCTTGAAACAA
TGATGGCCCTGATTGGAGAGCAATTTGATGAGGCGGATGAGATTTGTGGG
GTTGTTGCTAGTGTACGCCAGAGGCAGGACAAACTTGCCTTATGGACCAA
GACAGCAGCAAATGAAGCTGCTCAGATGGGCATTGGAAAGAAGTGGAAGG
AGATCCTCGATCTCACTGATAGGATCACTTACAGCTTCCACGATGACTCT
AGAAGGGATCGATCAGTGAAAAGTCGATACAGTGTGTGAACTCAAAAGTG
ACCGTTTTGTCGC
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