CK937435

Overview
NameCK937435
Unique NameCK937435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937435_ssr74 microsatellite CK937435_ssr74:74..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2029 contig Csv1_Contig2029:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_YEAST (Eukaryotic translation initiation factor 4E OS=Saccharomyces cerevisiae GN=TIF45 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.020e-31
Identity = 68/156 (43.59%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRK-ANLDTMWLETMMALIGEQFDEAD-EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTD 570
            H L  KWT W+   +  K   +W   +R V +F TVEEFW + + I +P  LP+ +D+H+F+  + P+WED   A GGKWS     K A++D +WL T++A+IGE  DE D +I GVV S+R+  +K ALWTK+   E   + IG K+K++L LTD
Sbjct:   37 HPLNTKWTLWYTKPAVDKS-ESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEPL-LRIGGKFKQVLKLTD 190          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: I4E1B_HUMAN (Eukaryotic translation initiation factor 4E type 1B OS=Homo sapiens GN=EIF4E1B PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.020e-31
Identity = 68/167 (40.72%), Postives = 98/167 (58.68%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDR--ITYSFH 591
            H L+ +W  WF    K  +  AW  ++  V   DTVE+FW LY  I   S+L    D+ LFK GI+P WED     GG+W V+     R   LD +WLET++ LIGE F+E + E+CG V ++R + DK+A+WT+ A N+A  + +G+ +KE L L+ +  I Y  H
Sbjct:   62 HPLQNRWALWF---FKNDRSRAWQDNLHLVTKVDTVEDFWALYSHIQLASKLSSGCDYALFKDGIQPMWEDSRNKRGGRWLVSLAKQQRHIELDRLWLETLLCLIGESFEEHSREVCGAVVNIRTKGDKIAVWTREAENQAGVLHVGRVYKERLGLSPKTIIGYQAH 225          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E2_SCHPO (Eukaryotic translation initiation factor 4E-2 OS=Schizosaccharomyces pombe GN=tif452 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.333e-31
Identity = 66/165 (40.00%), Postives = 102/165 (61.82%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRK-ANLDTMWLETMMALIGEQFD-EADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDR--ITYSFH 591
            H L+ +WT WF  +  P QG  W   ++++ +F TVEEFW +++ I K S LP  +D+  F  GI P+WEDP+  NGGKW+  S  K +NLD +WL  ++A IGE  D    E+ GVV ++R+   ++A+WT+   ++     IG ++KE+L ++D+  I YS H
Sbjct:   64 HPLQHEWTLWF--LKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKGIRPEWEDPQNMNGGKWAYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYSAH 226          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4EB_DANRE (Eukaryotic translation initiation factor 4E-1B OS=Danio rerio GN=eif4e1b PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.969e-31
Identity = 68/164 (41.46%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L+ +W  WF    K K    W  ++R +  FDTVE+FW LY  I  PS+L    D+ +FK GIEP WED     GG+W +T    +R   LD  WLET++ LIGE F   + +ICG V ++R + DK+ALWT  A N      IG+K+KE L L  ++   +
Sbjct:   34 HPLQNRWGLWFYKNDKSKM---WQDNLRLITKFDTVEDFWGLYNNIQLPSKLSSGCDYSMFKDGIEPMWEDRSNKCGGRWLITLAKQHRHTELDHFWLETLLCLIGEGFSSFSRDICGSVINIRAKGDKIALWTSNAENCETVTYIGRKYKESLGLPQKLVIGY 194          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_CANGA (Eukaryotic translation initiation factor 4E OS=Candida glabrata GN=TIF45 PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.877e-31
Identity = 67/162 (41.36%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSV-TSNRKANLDTMWLETMMALIGEQFDEAD-EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L  KWT W+   +  K   +W   +R V +F +VEEFW + + I +P  LP+ +D+H+F+  I P+WED   A GGKWS     R A +D +WL T++A+IGE  DE D +I GVV +VR+  ++ ALWTK+   E     IG ++K++L L D  T  F
Sbjct:   33 HPLNTKWTLWYTKPAVDKS-ESWSDLLRPVTSFQSVEEFWAIVQNIPEPHELPLKSDYHVFRNDIRPEWEDSANAKGGKWSFQVRGRGAEIDELWLRTLLAVIGETIDEEDSQINGVVLNVRKGGNRFALWTKSCDKEPLS-NIGARFKQVLKLADEDTLEF 192          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E3_CAEEL (Eukaryotic translation initiation factor 4E-3 OS=Caenorhabditis elegans GN=ife-3 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.064e-31
Identity = 69/175 (39.43%), Postives = 101/175 (57.71%), Query Frame = 1
Query:   88 VPPQSQP-HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDL--TDRITYSFH 591
            VPP+    H L+ +W  W+    + K+   W   ++ V  FDTVE+FW LY  I     L   +D++LFK GI+P WED     GG+W V  +++     LD  WLE +MA++GEQFDE  D ICG V +VRQ+ DK++LWT+ A  +   + IG+  K+ L +  T+ + Y  H
Sbjct:   24 VPPELLTRHPLQNRWALWYLKADRNKE---WEDCLKMVSLFDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVH 195          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E2_CAEEL (Eukaryotic translation initiation factor 4E-2 OS=Caenorhabditis elegans GN=ife-2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.473e-30
Identity = 61/155 (39.35%), Postives = 101/155 (65.16%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQF-DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILD 561
            +KL+R WT+W+ N  + K   +W   ++ V TF +V EFW L++ I  PS L   +D+++F+ GIEP WE P+  NGG+W +T  +      +DT+W E +MA+IGEQF D+ + +CG+V +VR +  K+++WT  +A++ A + IG   K++L+
Sbjct:   17 YKLKRNWTWWYLNDERNK---SWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDYNVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCGIVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQVLN 168          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E5_CAEEL (Eukaryotic translation initiation factor 4E-5 OS=Caenorhabditis elegans GN=ife-5 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.287e-30
Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQF-DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEIL 558
            + L+R W++WF N  +    A+W   ++KVYTF+TV EFW  YE I  PS L    D+++F+  I+PKWE PE  +GG+W +  N+      LD +WLE ++ALIGEQF  + + ICG+V +VR +  K+++WTK   ++   M IG   KE L
Sbjct:    9 YPLQRNWSWWFLNDDR---NASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKL 159          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E1_CAEEL (Eukaryotic translation initiation factor 4E-1 OS=Caenorhabditis elegans GN=ife-1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.312e-30
Identity = 63/154 (40.91%), Postives = 97/154 (62.99%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQF-DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEIL 558
            + L+R WT+W+ N  + K   +W   ++KVYTF+TV EFW LY+ I  PS L    D+++F+  I+P WE PE +NGG+W +  ++      +D +WLE +MAL+GEQF  + + ICG+V +VR +  K+++WTK   ++   M IG   KE L
Sbjct:   12 YPLKRNWTWWYLNDERNK---SWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKL 162          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_ASHGO (Eukaryotic translation initiation factor 4E OS=Ashbya gossypii GN=TIF45 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.550e-30
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQG--AAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN-RKANLDTMWLETMMALIGEQFDEAD-EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L  KWT W+   +KP  G   +W   +R V +F TVEEFW +   I KP  LP+ +D+HLF+  I P+WED   + GGKWS     R   +D +WL  ++A+IGE  DE + EI GVV +VR+   K+ LWTK +  +A    +G K+K +L L D  T  F
Sbjct:   35 HPLNSKWTLWY---TKPPVGDNESWSDLLRPVTSFTTVEEFWAIQNAIPKPRELPLKSDYHLFRNDIRPEWEDEANSRGGKWSFQFKVRNPPIDDLWLRALLAVIGESIDEDEFEINGVVINVRRSGFKIGLWTK-SVRQAPLSKVGAKFKAVLQLDDSDTLEF 194          
The following BLAST results are available for this feature:
BLAST of CK937435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E_YEAST1.020e-3143.59Eukaryotic translation initiation factor 4E OS=Sac... [more]
I4E1B_HUMAN1.020e-3140.72Eukaryotic translation initiation factor 4E type 1... [more]
IF4E2_SCHPO1.333e-3140.00Eukaryotic translation initiation factor 4E-2 OS=S... [more]
IF4EB_DANRE2.969e-3141.46Eukaryotic translation initiation factor 4E-1B OS=... [more]
IF4E_CANGA3.877e-3141.36Eukaryotic translation initiation factor 4E OS=Can... [more]
IF4E3_CAEEL5.064e-3139.43Eukaryotic translation initiation factor 4E-3 OS=C... [more]
IF4E2_CAEEL1.473e-3039.35Eukaryotic translation initiation factor 4E-2 OS=C... [more]
IF4E5_CAEEL4.287e-3042.21Eukaryotic translation initiation factor 4E-5 OS=C... [more]
IF4E1_CAEEL7.312e-3040.91Eukaryotic translation initiation factor 4E-1 OS=C... [more]
IF4E_ASHGO9.550e-3042.07Eukaryotic translation initiation factor 4E OS=Ash... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_F07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937435 ID=CK937435; Name=CK937435; organism=Citrus sinensis; type=EST; length=663bp
GGGGGGGAAAAAAATATAATTAATAGAAACAAAGAAGAGAGAGATATGGC
AACAAGTGAGGAGGCAAGCGCGACGGCGGCGGCGGAGGTGCCGCCGCAAT
CACAGCCGCACAAGCTCGAGAGAAAATGGACGTTTTGGTTCGACAACATA
TCAAAGCCCAAACAGGGCGCCGCGTGGGGCTCCTCCATGCGCAAAGTCTA
CACCTTCGACACTGTCGAAGAATTTTGGTGTTTGTATGAACAGATATTCA
AGCCAAGCCGGTTGCCAATGAATGCGGATTTCCATTTGTTCAAAACTGGG
ATAGAACCAAAGTGGGAAGATCCTGAGTGTGCGAATGGAGGAAAGTGGTC
GGTCACTAGCAACAGGAAGGCTAACCTTGATACCATGTGGCTTGAAACAA
TGATGGCCCTGATTGGAGAGCAATTTGATGAGGCGGATGAGATTTGTGGG
GTTGTTGCTAGTGTACGCCAGAGGCAGGACAAACTTGCCTTATGGACCAA
GACAGCAGCAAATGAAGCTGCTCAGATGGGCATTGGAAAGAAGTGGAAGG
AGATCCTCGATCTCACTGATAGGATCACTTACAGCTTCCACGATGACTCT
AGAAGGGATCGATCAGTGAAAAGTCGATACAGTGTGTGAACTCAAAAGTG
ACCGTTTTGTCGC
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