CK937435

Overview
NameCK937435
Unique NameCK937435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937435_ssr74 microsatellite CK937435_ssr74:74..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2029 contig Csv1_Contig2029:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: I4E1B_MOUSE (Eukaryotic translation initiation factor 4E type 1B OS=Mus musculus GN=Eif4e1b PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 68/175 (38.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:   91 PPQ--SQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDR--ITYSFH 591
            PP+  S+ H L+ +W  WF    K  +  AW  +++ V  F+TVE+FW +Y  I   S+L    D+ LFK GI P WED     GG+W ++ +   R   LD +WLET++ L+G  F+E + E+CG V ++R ++DK+ALWT  A ++A  M IG+ +KE L ++ +  I Y  H
Sbjct:   57 PPEVLSKLHPLQYRWVLWF---FKNDRSRAWQDNLQLVTKFNTVEDFWAVYSHIKLASKLSSGCDYALFKEGILPMWEDNRNKQGGRWLLSIDKQLRHFELDRLWLETLLCLVGNCFEEYSREVCGAVVNIRTKRDKIALWTSEAEDKAGVMQIGQIYKERLGISTKTIIGYQAH 228          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E1_SCHPO (Eukaryotic translation initiation factor 4E-1 OS=Schizosaccharomyces pombe GN=tif451 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.084e-29
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN--LDTMWLETMMALIGEQFD-EADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDL--TDRITYSFH 591
            H L R WT WF  +  P  G  W    + + TF++VEEFW ++  I   S LP+ +D+  F+ G+ P+WED     GGKW+  +  +    LD MWL T++A IGE  D    E+ GVV ++R+   +LA+WTK+  N    M IG ++K++L+L  ++ I +S H
Sbjct:   38 HPLARPWTLWF--LMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKWAFQNKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAH 201          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E2_MOUSE (Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 1
Query:    7 EKNIINRNKEERDMXXXXXXXXXXXXXVPPQSQPHKLERKWTFWFDNIS--KPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDL 564
            E+N   ++ E+                V P    H L+  +TFW+   +  +P    ++  +++++ TF +VE+FW  Y  + +P  L  ++DFHLFK GI+P WED    NGGKW +   RK      W   ++A++GEQF   +EICG V SVR ++D +++W KTA+++A    I    + +L+L
Sbjct:   20 EENSTQKDGEKEKTDRDKSQSSGKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKW-IIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNL 206          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E2_HUMAN (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 1
Query:    7 EKNIINRNKEERDMXXXXXXXXXXXXXVPPQSQPHKLERKWTFWFDNIS--KPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDL 564
            E+N   ++ E+                V P    H L+  +TFW+   +  +P    ++  +++++ TF +VE+FW  Y  + +P  L  ++DFHLFK GI+P WED    NGGKW +   RK      W   ++A++GEQF   +EICG V SVR ++D +++W KTA+++A    I    + +L+L
Sbjct:   20 EENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKW-IIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNL 206          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E_CANAL (Eukaryotic translation initiation factor 4E OS=Candida albicans GN=TIF45 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.525e-27
Identity = 59/167 (35.33%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAA--WGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN----LDTMWLETMMALIGEQF-DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITYSF 588
            H L  +WT W+   +KP+   +  W   ++ V TF +VEEFW +Y  I   ++LP+ +D+HLFK GI P+WED   + GGKW  + N+K+     ++ +WL  ++A+IGE   DE +E+ G+V ++R++  ++ +WTK   +E+    +G++ K++L L D     F
Sbjct:   30 HPLNSRWTLWY---TKPQTNKSENWHDLLKPVITFSSVEEFWGIYNSIPPANQLPLKSDYHLFKEGIRPEWEDEANSKGGKWQFSFNKKSEVNPIINDLWLRGLLAVIGETIEDEENEVNGIVLNIRKQAYRVGIWTKD-CDESKLKTVGERLKKVLQLNDEQKVEF 192          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E3_ARATH (Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  109 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDL 564
            H L  K++ W+   +   +  ++  +++K+  F TVE FW  Y  + + S LP   D H FK GI P WED    NGGKW +  ++  +    W + ++AL+G+Q D+AD ICG V SVR  +D +++W + A++  A MG+    K  L L
Sbjct:   43 HPLRYKFSIWYTRRTPGVRNQSYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSA-RFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKL 193          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E4_CAEEL (Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.633e-21
Identity = 55/160 (34.38%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   91 PPQSQPHKLERKWTF-WFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDT-MWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDL 564
            P  S  H+L+  +TF +F   +       + S ++ V    +VE+FW +     +P+ +   AD H FKTG++P WEDP    GGKW +    K  L T +W   +MA+IGEQF   DE+CG V S+R ++D ++LW + A +      I +  + +L L
Sbjct:   25 PVGSDDHQLQYSYTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWII--RLKKGLSTRIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQL 182          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E3_DANRE (Eukaryotic translation initiation factor 4E type 3 OS=Danio rerio GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  115 LERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDE----ADEICGVVASVRQRQDKLALWTKTA--ANEAAQMG 531
            L   WTFW D        A   S+++K+YT  TV+ FW +Y  I   S LP+   +HL +    P WE+   A GG W +   +++ L  +W E ++A IGEQF +     DE+ GV  SVR+R+D + +W   A  ANEA  +G
Sbjct:   49 LHSPWTFWLDRSLPGTTAAECESNLKKIYTVHTVQSFWSVYNNIPPVSCLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKESTL-AVWKELLLATIGEQFTDYCASEDEVVGVSVSVREREDVVQVWNGNASFANEANVLG 192          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E3_MOUSE (Eukaryotic translation initiation factor 4E type 3 OS=Mus musculus GN=Eif4e3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 1
Query:   88 VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEA----DEICGVVASVRQRQDKLALWTKTAA 510
            +PP+     L   WTFW D        A   S+++K+YT  TV+ FW +Y  I   + LP+   +HL +    P WE+   A GG W +    K +  T+W E ++A IGEQF +     DEI GV  SVR R+D + +W   A+
Sbjct:   23 LPPEPGGVPLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKM-KVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVSVRDREDVVQVWNVNAS 166          
BLAST of CK937435 vs. ExPASy Swiss-Prot
Match: IF4E3_HUMAN (Eukaryotic translation initiation factor 4E type 3 OS=Homo sapiens GN=EIF4E3 PE=2 SV=4)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  115 LERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEA----DEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDLTDRITY 582
            L   WTFW D        A   S+++K+YT  TV+ FW +Y  I   + LP+   +HL +    P WE+   A GG W +    K +  T+W E ++A IGEQF +     DE+ GV  SVR R+D + +W       A+ +G     ++I +L   IT+
Sbjct:   49 LHSSWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKM-KVPKDSTSTVWKELLLATIGEQFTDCAAADDEVIGVSVSVRDREDVVQVWNV----NASLVGEATVLEKIYELLPHITF 203          
The following BLAST results are available for this feature:
BLAST of CK937435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
I4E1B_MOUSE1.629e-2938.86Eukaryotic translation initiation factor 4E type 1... [more]
IF4E1_SCHPO8.084e-2937.95Eukaryotic translation initiation factor 4E-1 OS=S... [more]
IF4E2_MOUSE6.844e-2832.98Eukaryotic translation initiation factor 4E type 2... [more]
IF4E2_HUMAN6.844e-2832.98Eukaryotic translation initiation factor 4E type 2... [more]
IF4E_CANAL1.525e-2735.33Eukaryotic translation initiation factor 4E OS=Can... [more]
IF4E3_ARATH4.152e-2535.53Eukaryotic translation initiation factor 4E type 3... [more]
IF4E4_CAEEL1.633e-2134.38Eukaryotic translation initiation factor 4E-4 OS=C... [more]
IF4E3_DANRE2.785e-2137.24Eukaryotic translation initiation factor 4E type 3... [more]
IF4E3_MOUSE4.750e-2135.86Eukaryotic translation initiation factor 4E type 3... [more]
IF4E3_HUMAN1.805e-2033.75Eukaryotic translation initiation factor 4E type 3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_F07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937435 ID=CK937435; Name=CK937435; organism=Citrus sinensis; type=EST; length=663bp
GGGGGGGAAAAAAATATAATTAATAGAAACAAAGAAGAGAGAGATATGGC
AACAAGTGAGGAGGCAAGCGCGACGGCGGCGGCGGAGGTGCCGCCGCAAT
CACAGCCGCACAAGCTCGAGAGAAAATGGACGTTTTGGTTCGACAACATA
TCAAAGCCCAAACAGGGCGCCGCGTGGGGCTCCTCCATGCGCAAAGTCTA
CACCTTCGACACTGTCGAAGAATTTTGGTGTTTGTATGAACAGATATTCA
AGCCAAGCCGGTTGCCAATGAATGCGGATTTCCATTTGTTCAAAACTGGG
ATAGAACCAAAGTGGGAAGATCCTGAGTGTGCGAATGGAGGAAAGTGGTC
GGTCACTAGCAACAGGAAGGCTAACCTTGATACCATGTGGCTTGAAACAA
TGATGGCCCTGATTGGAGAGCAATTTGATGAGGCGGATGAGATTTGTGGG
GTTGTTGCTAGTGTACGCCAGAGGCAGGACAAACTTGCCTTATGGACCAA
GACAGCAGCAAATGAAGCTGCTCAGATGGGCATTGGAAAGAAGTGGAAGG
AGATCCTCGATCTCACTGATAGGATCACTTACAGCTTCCACGATGACTCT
AGAAGGGATCGATCAGTGAAAAGTCGATACAGTGTGTGAACTCAAAAGTG
ACCGTTTTGTCGC
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