FC921764

Overview
NameFC921764
Unique NameFC921764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.530e-22
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            RRQAV VSPLRRV   + LL  GAREA+FRNIK+IAEC A+ELINAAK SS+SYAIKKKDELERVA+SNR
Sbjct:  159 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            RRQAV +SPLRRV   + LLT GARE++FRNIK+IAEC A+ELINAAK SS+SYAIKKKDE+ERVA++NR
Sbjct:   85 RRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            RRQAV +SPLRRV   + L+T GAREA+FRNIK+IAEC A+ELINAAK SS+SYAIKKKDE+ERVA++NR
Sbjct:  138 RRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.123e-21
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            RRQAV VSPLRRV   + L+  GAREA+FRNIK++AEC A+ELINAAK SS+SYAIKKKDELERVA+SNR
Sbjct:  161 RRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.773e-21
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            RRQAV V+PLRRV   + LL  GAREA+FRN+K+IAEC A+ELINAAK SS+SYAIKKKDELERVA+SNR
Sbjct:  141 RRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            RRQAV VSPLRRV   + LL  GAREA+FRNIK+IAEC A+ELINA K SS+SYAIKKKDELERVA+SNR
Sbjct:  135 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.067e-17
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            RRQAV VSP+RRV   + LLT G R A+FRNI+++AEC A+ELINA+K S +SY+IK+KD LER A+S+R
Sbjct:  121 RRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.878e-15
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            R QAV VSPLRR+   L LL +G R  +FRN KS+AEC A+E++NA+KS + S+AI KK++LERVA SNR
Sbjct:   79 RGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 RRQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            RR +V VSPL+R+   +S L+ G R ASFRN  ++AE  A ELI A+ +S +SYA+ KK E+ER+AQSNR
Sbjct:  139 RRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
BLAST of FC921764 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   10 RQAVHVSPLRRVP*NLSLLTIGAREASFRNIKSIAECPAEELINAAKSSSHSYAIKKKDELERVAQSNR 216
            R +V V+P RRV   L  +  GAR+ +F N K I EC AEELI AA+    SYAI++K+E+ER+A S+R
Sbjct:  137 RVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
The following BLAST results are available for this feature:
BLAST of FC921764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS5A_DROME9.530e-2278.5740S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_NICPL1.245e-2174.2940S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS52_ARATH1.245e-2174.2940S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5B_DROME2.123e-2175.7140S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL2.773e-2175.7140S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_RAT3.621e-2177.1440S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_DICDI7.067e-1762.8640S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI3.878e-1560.0040S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS5_ENCCU8.086e-1354.2940S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_AERPE4.437e-1150.7230S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC06052A12T7 RindPdigS Citrus sinensis cDNA clone C06052A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921764 ID=FC921764; Name=FC921764; organism=Citrus sinensis; type=EST; length=324bp
CCGCCCCGTCGTCAAGCCGTCCATGTGTCTCCCCTCCGTCGCGTGCCCTA
GAACCTCTCTCTGCTCACCATCGGTGCCCGCGAGGCTTCTTTCCGCAACA
TCAAGAGCATTGCTGAGTGCCCTGCTGAGGAGCTGATCAACGCCGCCAAG
AGTTCCTCCCACTCCTACGCTATCAAGAAGAAGGATGAGCTCGAGCGTGT
TGCCCAGAGCAACCGGTAAAGGGGTTGTGTTGGATTTGTTCTCCCTATGG
TCCTCTGTTTGCGTATACTGGAGTGGACGGGGGTTTAACCCGGATTCAGT
GGATTCGCATGCATCTGCCAGGCT
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