FC921759

Overview
NameFC921759
Unique NameFC921759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10524 contig Csv1_Contig10524:565..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921759 vs. ExPASy Swiss-Prot
Match: HEMH_LEPBA (Ferrochelatase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=hemH PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.767e-11
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   25 GDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEI 261
            GD Y +++E  +  I   L   G N    ++YQS+VGP +W +P T +++  L ++G K +   P+SFVS+H+ETLEEI
Sbjct:  222 GDRYMEEVELSVKGIADELSKFGFNGGVHISYQSKVGPAKWTEPSTIQMISSLAKQG-KHIAVYPISFVSDHLETLEEI 299          
BLAST of FC921759 vs. ExPASy Swiss-Prot
Match: HEMH_RHIE6 (Ferrochelatase OS=Rhizobium etli (strain CIAT 652) GN=hemH PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.532e-11
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   19 KAGDPYRDQMEECIYLIMQRLKDRGINNDHTLA-YQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEI 261
            K GDPY  Q ++   L+ +RL   G+  ++ +  +QSR GP +WL+PYTD+ + +L + GVK +  I   FVS+ +ETLEEI
Sbjct:  222 KQGDPYYCQCQKTGRLLRERL---GLTQENFMVTFQSRFGPEEWLQPYTDKTVEKLARDGVKRIAVINPGFVSDCLETLEEI 300          
BLAST of FC921759 vs. ExPASy Swiss-Prot
Match: HEMH_RHIME (Ferrochelatase OS=Rhizobium meliloti GN=hemH PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.838e-11
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    7 SYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT-LAYQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEI 261
            SY EK GDPY  Q ++   L+ ++L   G   D   + +QSR GP +WL+PYTD  +  L ++GVK +  I   FVS+ +ETLEEI
Sbjct:  214 SYFEK-GDPYYCQCQKTARLLREKL---GWPQDRLQVTFQSRFGPEEWLQPYTDATVERLAKEGVKRIAVINPGFVSDCLETLEEI 295          
BLAST of FC921759 vs. ExPASy Swiss-Prot
Match: HEMH_HYPNA (Ferrochelatase OS=Hyphomonas neptunium (strain ATCC 15444) GN=hemH PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.838e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   13 VEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEI 261
            V K+GDPY+ Q E    +I  R+     + + ++ YQSRVGP++W+ P T+E +  +  +G +++L  P++FVSEHIETL E+
Sbjct:  199 VVKSGDPYQWQCEALAEMIAGRVP---ADWEVSVCYQSRVGPMKWIGPPTEEEIARISDQG-RNILIAPIAFVSEHIETLVEL 277          
The following BLAST results are available for this feature:
BLAST of FC921759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
HEMH_LEPBA5.767e-1140.51Ferrochelatase OS=Leptospira biflexa serovar Patoc... [more]
HEMH_RHIE67.532e-1142.68Ferrochelatase OS=Rhizobium etli (strain CIAT 652)... [more]
HEMH_RHIME9.838e-1144.19Ferrochelatase OS=Rhizobium meliloti GN=hemH PE=3 ... [more]
HEMH_HYPNA9.838e-1140.96Ferrochelatase OS=Hyphomonas neptunium (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionC06052A06T7 RindPdigS Citrus sinensis cDNA clone C06052A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921759 ID=FC921759; Name=FC921759; organism=Citrus sinensis; type=EST; length=269bp
CTTGTCAGTTATGTTGAGAAAGCTGGTGATCCATACAGAGATCAGATGGA
GGAGTGTATCTACCTAATCATGCAGAGGTTGAAAGATAGAGGAATCAACA
ATGATCATACTTTGGCATACCAGAGTCGAGTTGGGCCTGTACAATGGCTG
AAGCCTTACACTGATGAAGTTCTTGTGGAGCTTGGCCAGAAAGGTGTCAA
GAGTCTTCTAGCCATTCCAGTCAGTTTTGTGAGCGAGCACATTGAAACTC
TTGAAGAGATTGACATGGA
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