CN186398

Overview
NameCN186398
Unique NameCN186398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12355 contig Csv1_Contig12355:28..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186398 vs. ExPASy Swiss-Prot
Match: APX4_SOLLC (Putative L-ascorbate peroxidase, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 59/169 (34.91%), Postives = 77/169 (45.56%), Query Frame = 1
Query:  109 ALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVK------AKHPKITYADLYQLAGVVAVEVT---------GGPT------------------VDFVPGRKDSKISPKEGRLPD-AKRGAPHLRDIFYRMGLSDKDIVALS 513
            A+ A  +  P +L LA +DA TYD  TKTGGPNGSIR   E S   N GL  AL+  EE K      +K   I+YADL Q A   AV+ T         GG                     D + GR D++    EGR+P   K     ++D F  +GL  + +  +S
Sbjct:  101 AIKANPDIIPSLLTLALNDAITYDKATKTGGPNGSIRFSSEISRPENKGLDAALNLLEESKKVIDLDSKGGPISYADLIQFAAQSAVKSTFIASAISKCGGNVEKGTLLYSAYGSNGQWGQFDRIFGRSDAQEPDPEGRVPQWDKASVQEMKDKFKAVGLGPRQLAVMS 269          
BLAST of CN186398 vs. ExPASy Swiss-Prot
Match: KATG2_BURCM (Catalase-peroxidase 2 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=katG2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 72/266 (27.07%), Postives = 102/266 (38.35%), Query Frame = 1
Query:   79 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKD----------------SKISPKEGRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER--------------------------------SGFDGPWTREPLKFDNSYFVELL 618
            +I+  ++D+RA +          Y N  P  +R+AWH AGTY      GG  G+  R E   S   N  L  A      +K K+   I++ DL  L G VA+E  G  T  F  GR+D                S    K G+L                      PD    A  +RD F RM ++D++ +AL +GGHT G+AH    P++                                SG +G W+ +P+ F   Y   LL
Sbjct:   72 DIEAVKKDIRATLTTSQDWWPADYGNYGPFFIRMAWHGAGTYRTYDGRGGAGGAQQRFEPLNSWPDNANLDKARRLLWPIKKKYGENISWGDLMVLTGNVALESMGFQTFGFGGGREDDWQSDLVYWGAGTKFMSNNRDKNGKLEKPLAATQMGLIYVNPEGPNGNPDPVAAAKDIRDAFGRMAMNDEETLALIAGGHTFGKAHGAASPDKCVGAAPAGAGVEAQGLGWANKCGTGKGADTITSGLEGAWSVDPVHFTMQYLDNLL 337          
BLAST of CN186398 vs. ExPASy Swiss-Prot
Match: APX4_ARATH (Probable L-ascorbate peroxidase 4, chloroplastic OS=Arabidopsis thaliana GN=APX4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 56/160 (35.00%), Postives = 73/160 (45.62%), Query Frame = 1
Query:  136 PIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVK------AKHPKITYADLYQLAGVVAVEVT---------GG------------------PTVDFVPGRKDSKISPKEGRLPD-AKRGAPHLRDIFYRMGLSDKDIVALS 513
            P +L+LA +DA TYD  TK+GG NGSIR   E S   N GL   L   EEVK      +K   I+YAD+ QLAG  AV+ T         GG                     D   GR D+  +  EGR+P   K     ++D F  +GL  + +  +S
Sbjct:  114 PSLLKLALNDAMTYDKATKSGGANGSIRFSSELSRAENEGLSDGLSLIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMS 273          
BLAST of CN186398 vs. ExPASy Swiss-Prot
Match: KATG2_BURA4 (Catalase-peroxidase 2 OS=Burkholderia ambifaria (strain MC40-6) GN=katG2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 71/266 (26.69%), Postives = 102/266 (38.35%), Query Frame = 1
Query:   79 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKD----------------SKISPKEGRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER--------------------------------SGFDGPWTREPLKFDNSYFVELL 618
            +I+  ++D+RA +          Y N  P  +R+AWH AGTY      GG  G+  R E   S   N  L  A      +K K+   I++ DL  L G VA+E  G  T  F  GR+D                S    K G+L                      PD    A  +R+ F RM ++D++ +AL +GGHT G+AH    P++                                SG +G W+ +P+ F   Y   LL
Sbjct:   72 DIEAVKKDIRATLTTSQDWWPADYGNYGPFFIRMAWHGAGTYRTYDGRGGAGGAQQRFEPLNSWPDNANLDKARRLLWPIKKKYGQNISWGDLMVLTGNVALESMGFQTFGFGGGREDDWQSDLVYWGAGTKFMSDNRDKNGKLEKPLAATQMGLIYVNPEGPNGNPDPVAAAKDIREAFGRMAMNDEETLALIAGGHTFGKAHGAASPDKCVGAAPAGAGVEAQGLGWANKCGTGKGADTITSGLEGAWSVDPVHFTMQYLDNLL 337          
BLAST of CN186398 vs. ExPASy Swiss-Prot
Match: KATG2_BURVG (Catalase-peroxidase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=katG2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 70/266 (26.32%), Postives = 101/266 (37.97%), Query Frame = 1
Query:   79 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKD----------------SKISPKEGRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER--------------------------------SGFDGPWTREPLKFDNSYFVELL 618
            +I+  ++D+R  +          Y N  P  +R+AWH AGTY      GG  G+  R E   S   N  L  A      +K K+   I++ DL  L G VA+E  G  T  F  GR+D                S    K G+L                      PD    A  +R+ F RM ++D++ +AL +GGHT G+AH    P++                                SG +G W+ +P+ F   Y   LL
Sbjct:   72 DIEAVKKDIRTTLTTSQDWWPADYGNYGPFFIRMAWHGAGTYRTYDGRGGAGGAQQRFEPLNSWPDNANLDKARRLLWPIKKKYGQNISWGDLMVLTGNVALESMGFQTFGFGGGREDDWQSDLVYWGAGPKFMSNNRDKNGKLEKPLAATQMGLIYVNPEGPNGNPDPVAAAQDIREAFGRMAMNDEETLALIAGGHTFGKAHGAASPDKCVGVAPAGAGVEAQGLGWANKCGTGKGVDTITSGLEGAWSVDPVHFTMQYLDNLL 337          
BLAST of CN186398 vs. ExPASy Swiss-Prot
Match: KATG_GRABC (Catalase-peroxidase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=katG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 66/242 (27.27%), Postives = 90/242 (37.19%), Query Frame = 1
Query:  121 YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKD----------------SKISPKEGRL----------------------PDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER--------------------------------SGFDGPWTREPLKFDNSYFVEL 615
            Y N  P  +R+AWH AGTY      GG +G+  R E   S   N  L  A      +K K+  K+++ DL  L G VA+E  G  T  F  GR D                S    K G+L                      PD    A  +R+ F  M + D++ VAL +GGHT G+AH    P +                                SG +G W+ +P+ F + Y   L
Sbjct:  112 YGNYGPFFIRMAWHGAGTYRTYDGRGGASGAQQRFEPLNSWPDNANLDKARRLLWPIKKKYGEKLSWGDLMVLTGNVALETMGFKTYGFAGGRTDDWEPDLIYWGSGAKFMSNNRDKNGKLEKPLAATQMGLIYVNPEGPNGVPDPVAAARDIREAFGGMAMDDEETVALIAGGHTFGKAHGAASPSKCVGPAPAAAGIEEQGLGWKNKCGTGKGPDAITSGLEGAWSADPVNFTSQYLDNL 353          
The following BLAST results are available for this feature:
BLAST of CN186398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
APX4_SOLLC7.225e-1334.91Putative L-ascorbate peroxidase, chloroplastic OS=... [more]
KATG2_BURCM1.232e-1227.07Catalase-peroxidase 2 OS=Burkholderia ambifaria (s... [more]
APX4_ARATH3.586e-1235.00Probable L-ascorbate peroxidase 4, chloroplastic O... [more]
KATG2_BURA44.683e-1226.69Catalase-peroxidase 2 OS=Burkholderia ambifaria (s... [more]
KATG2_BURVG1.043e-1126.32Catalase-peroxidase 2 OS=Burkholderia vietnamiensi... [more]
KATG_GRABC3.035e-1127.27Catalase-peroxidase OS=Granulibacter bethesdensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186398 ID=CN186398; Name=CN186398; organism=Citrus sinensis; type=EST; length=720bp
GAGGGTAAACTGTCAAAAGGTCGTTACAGAAAAAGAGCTCCGATGGCTTT
ACCGGTCGTTGACACAGAGTACCTGAAGGAGATCGACAAGGCTCGTCGCG
ATCTCCGCGCTCTTATCGCTTACAAGAACTGTGCTCCAATCATGCTCCGT
CTAGCGTGGCACGACGCGGGAACATATGACGTGAACACGAAGACTGGTGG
ACCAAATGGCTCGATAAGGAACGAAGAGGAGTACTCTCATGGCTCCAACA
ATGGCTTGAAAATCGCTCTTGATTTTTGTGAGGAAGTGAAGGCTAAACAT
CCAAAAATAACATATGCAGACCTATACCAGCTTGCGGGTGTTGTTGCAGT
TGAGGTCACTGGAGGTCCTACAGTCGACTTTGTTCCTGGTAGAAAGGATT
CAAAAATTTCTCCCAAGGAAGGGCGTCTTCCAGATGCCAAACGAGGTGCA
CCTCATCTGAGGGATATCTTTTATCGGATGGGTCTGTCTGACAAGGATAT
AGTGGCACTCTCAGGGGGCCATACTTTGGGAAGGGCACATCCAGAGAGAT
CAGGTTTTGACGGCCCTTGGACCAGGGAGCCTCTGAAATTTGATAACTCA
TACTTTGTGGAGTTGCTGAATGGGGAATCAGAAGGATTACTGCAACTTCC
AACAGACAAGGCTTTATTAGAAGACCCTGAGTTCCGTCGTTATGTTGAGT
TGTATGCAAAGGATGAGGAT
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