CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNY3 (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Synechocystis sp. (strain PCC 6803) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.078e-46
Identity = 94/194 (48.45%), Postives = 129/194 (66.49%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MPIG P V +R PG    +W+D++  L +ER+IF+GQ +++  +N+I+A +LYLDS D SK +Y+YIN PGG VT  +AIYDTMQ +K+ V T CVG A  +  FLLA G  G R A+P +RI +  P  G  R QA DI  EA E+LR+R  + + ++++TGQ  EKI KD  R     + EA EYGLID++I
Sbjct:    1 MPIGVPSVPFRLPGSQYERWIDIYTRLSQERIIFLGQEVNDSIANRIVAFLLYLDSDDPSKPIYLYINSPGGSVTAGMAIYDTMQYIKAEVITICVGLAASMGAFLLASGAPGKRLALPHARIMIHQPMGGTGRRQATDIDIEAREILRIRQQLNEIMAQRTGQTVEKIAKDTDRDYFLSAAEAKEYGLIDKVI 194          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJB (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. GN=clpP1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.662e-46
Identity = 96/195 (49.23%), Postives = 127/195 (65.13%), Query Frame = -1
Query:  246 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 827
            MPIG P+V YR PGE   QW+ L + LY+ER++FIG+ ID+  +N I+  MLYL+S D  K + MYIN PGG VT  +AIYDTM  +K  + T CVG A  +  FLLA G KG R A+P SRI L  P+ G  +GQA DI   A E LRV+  + + L++ TGQP EKI +D+ R     + EA  YG++DR+I+
Sbjct:    1 MPIGVPRVPYRLPGEPYSQWISLDDRLYQERILFIGEPIDDSLANTIVGVMLYLNSQDPQKDIVMYINSPGGSVTAGMAIYDTMNHIKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQPSLGTIQGQASDIEIRARETLRVKRRMNEILAQTTGQPLEKIERDVERDFYLSATEAQAYGIVDRVIQ 195          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJA (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.477e-45
Identity = 96/195 (49.23%), Postives = 127/195 (65.13%), Query Frame = -1
Query:  246 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 827
            MPIG P+V YR PGE   QW+ L + LY+ER++FIG+ ID+  +N I+  MLYL+S D  K + MYIN PGG VT  +AIYDTM  +K  + T CVG A  +  FLLA G KG R A+P SRI L  P+ G  +GQA DI   A E LRV+  + + L++ TGQP EKI +D+ R     + EA  YG++DR+I+
Sbjct:    1 MPIGVPRVPYRLPGEPYSQWISLDDRLYQERILFIGEPIDDNLANTIVGVMLYLNSQDPQKDIVMYINSPGGSVTAGMAIYDTMNHVKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQPSLGMIQGQASDIEIRARETLRVKRRMNELLAQMTGQPLEKIERDVERDFYLSATEAQAYGIVDRVIQ 195          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CHAGL (ATP-dependent Clp protease proteolytic subunit OS=Chaetosphaeridium globosum GN=clpP PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.332e-45
Identity = 86/193 (44.56%), Postives = 131/193 (67.88%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MP+G PKV YR PG+   QW+DL+N LYRER++F+GQ ++ E +NQI+  MLYL+  D SK +Y+YIN PGG V P +AIYDTMQ ++  + T C+G A  +  F+L GGE   R A+P +R+ +  P+ +  + QA ++  EA+E+L++RD I K   ++TG+P   I++D+ R     ++EA EYG++D +
Sbjct:    1 MPVGVPKVPYRLPGDVQVQWIDLYNRLYRERILFLGQTVNYEIANQIIGLMLYLNGDDKSKDMYLYINSPGGAVVPGIAIYDTMQFVEPEIRTICMGVAASMGSFILTGGEITKRIALPHARVMIHQPSSSYYKDQAGELIMEAEEVLKLRDCITKVYVQRTGKPISVISEDMERDVFMSAKEAKEYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_STAPU (ATP-dependent Clp protease proteolytic subunit OS=Staurastrum punctulatum GN=clpP PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.081e-43
Identity = 85/193 (44.04%), Postives = 129/193 (66.84%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG P+V +R PGE    WVD++N LYRER++F+GQN+D+E +NQ++  M+YL+  D+SK +YMYIN PGG V   +++YD MQ +   V T C+G A  +  F+L GGE   R A+P +R+ +  PA +   GQA +   EA+E+L++RD I K   ++TG+P   I++D+ R     ++EA EYG++D +
Sbjct:    1 MPIGVPRVPFRLPGEEEAVWVDVYNRLYRERLLFLGQNVDDEIANQLIGIMIYLNGEDESKDMYMYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECMMEAEEVLKLRDCITKVYVQRTGKPAWLISEDMERDVFMSAKEAQEYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LEPTE (ATP-dependent Clp protease proteolytic subunit OS=Leptosira terrestris GN=clpP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.863e-43
Identity = 81/192 (42.19%), Postives = 127/192 (66.15%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MP+G PKV Y  P E    W+DL++ LY+ER+I I  ++++E  NQI++ ++YL + DDSK  ++YIN PGG VT  +AIYD M+   +PV T  VG +  +A F+LAGG+ G R A P SRI +  P G + GQ+ +I +EA E++R+R  + +  +++TGQP + I +D+ R +   ++EA  YG++D +
Sbjct:    1 MPVGVPKVFYALPDEEEADWIDLYHCLYQERLIVICGDLNDEAVNQIVSVLIYLSTRDDSKEFFIYINSPGGSVTSGIAIYDAMRFNNTPVNTIAVGISASMASFILAGGDIGKRLAFPHSRIMIHQPEGGSEGQSSEIVHEAQEVVRIRRQVARIYAQRTGQPLDTIARDMDRDQFMSAREAKTYGIVDLV 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CHAVU (ATP-dependent Clp protease proteolytic subunit OS=Chara vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.963e-43
Identity = 86/197 (43.65%), Postives = 125/197 (63.45%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIG PKV +R PGE    WVD++N LYRER++F+GQ +D+E +NQ++  M+YL+  DDSK ++MYIN PGG V   +A++D MQ +   V T C+G A  +  F+L GGE   R A+P +R+ +  PA +   GQA +   EA+E+L++RD I K    +TGQP   I +D+ R     + EA  YG++D +   P
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWVDIYNRLYRERLLFLGQRVDDEIANQLIGIMMYLNGEDDSKEMFMYINSPGGSVVAGIAVFDAMQYVGPDVTTICMGMAASMGSFILMGGEMTKRIALPHARVMIHQPASSYYDGQAGECLMEAEEVLKLRDCIAKVYMNRTGQPGWVIYRDMDRDIFMSALEAKSYGIVDLVGEDP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ADICA (ATP-dependent Clp protease proteolytic subunit OS=Adiantum capillus-veneris GN=clpP PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 8.963e-43
Identity = 83/193 (43.01%), Postives = 130/193 (67.36%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE    WVD++N LYRER++F+GQ +D+E +NQ++  M+YL+S D +K +Y+Y+N PGG V   +++YD MQ +   V T C+G A  +  F+LAGGE   R A+P +R+ +  PA +   GQA +   EA+E+L++RD I K  +++TG+P   I++D+ R     ++EA +YG++D +
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWVDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNSEDQAKDMYLYVNSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILAGGEITRRIALPHARVMIHQPASSYYDGQAGECVMEAEEVLKLRDCITKVYAQRTGKPLWLISEDMERDVFLSAEEAQDYGVVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_MESVI (ATP-dependent Clp protease proteolytic subunit OS=Mesostigma viride GN=clpP PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.997e-42
Identity = 83/193 (43.01%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MPIG PKV YR PGE    +VD++N LYRER++F+G+++D+E +NQ++  M++L+S DD+K ++ YIN PGG +   L +YD +Q +   V T C+G A  +A F+LAGG  G R   P +R+ L  P G   G+A  +  E+ E+ R+R+ I     ++TGQ  EKI KD++R      ++A EYGLID ++
Sbjct:    1 MPIGIPKVAYRIPGEAVSTYVDVYNRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIFFYINSPGGSMNAGLGVYDMIQHVNVDVTTICMGLAASMASFILAGGTPGQRLMFPHARVMLHQPMGGNGGKAKYMVEESVEVKRLRELIAHLYVKRTGQSLEKIRKDMNRDNFMRPRQAKEYGLIDHMV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CHLAT (ATP-dependent Clp protease proteolytic subunit OS=Chlorokybus atmophyticus GN=clpP PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.608e-42
Identity = 83/193 (43.01%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MPIG PKV YR PGE    +VD++N LYRER++F+G+++D+E +NQ++  M++L+S DD+K ++ YIN PGG +   L +YD +Q +   V T C+G A  +A F+LAGG  G R   P +R+ L  P G   G+A  +  E+ E+ R+R+ I    +++TGQP E+I  D++R      + A EYGLID +I
Sbjct:    1 MPIGIPKVAYRIPGESVSTYVDVYNRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIFFYINSPGGSMNSGLGVYDMIQHINVDVTTICMGLAASMASFILAGGTPGQRLMFPHARVMLHQPMGGNGGKAKYMVEESVEVKRLRELIAHLYAKRTGQPIERIRIDMNRDNFMRPRAAKEYGLIDHMI 193          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP3_SYNY35.078e-4648.45Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP1_SYNJB8.662e-4649.23ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNJA1.477e-4549.23ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CHAGL7.332e-4544.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAPU3.081e-4344.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPTE6.863e-4342.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHAVU8.963e-4343.65ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ADICA8.963e-4343.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MESVI1.997e-4243.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLAT2.608e-4243.01ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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