CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ANTFO (ATP-dependent Clp protease proteolytic subunit OS=Anthoceros formosae GN=clpP PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.406e-42
Identity = 84/191 (43.98%), Postives = 128/191 (67.02%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MPIG PKV +R PGE    W+D++N LYRER++F+GQ++D+E +NQ++  M+YL+  D+SK +Y+YIN PGG V   +++YDTMQ +   V T C+G A  +  F+L GGE   R A+P +RI +  PA +   GQA +   EA+E+L++RD I K   ++TG+P   I++D+ R     ++EA  YG++D
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVYDTMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARIMIHQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAKEAQIYGIVD 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PANGI (ATP-dependent Clp protease proteolytic subunit OS=Panax ginseng GN=clpP PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.448e-42
Identity = 85/193 (44.04%), Postives = 126/193 (65.28%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +  E SNQ++  M+YL   DD+K +Y+++N PGG V P +AIYDTMQ ++  V T C+G A  +  F+LAGGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ I +   +KTG+PF  +++DL R     + EA  YG++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDAYWVDIYNRLYRERLLFLGQPVASEISNQLIGLMVYLSIEDDTKDLYLFMNSPGGWVLPGIAIYDTMQFVRPDVHTICMGLAASMGSFILAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEAEELLKLRETITRVYVQKTGKPFWVVSEDLERDVFMSATEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_NEPOL (ATP-dependent Clp protease proteolytic subunit OS=Nephroselmis olivacea GN=clpP PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.588e-42
Identity = 87/201 (43.28%), Postives = 124/201 (61.69%), Query Frame = -1
Query:  225 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 827
            MP+G PKV YR PGE + QWVDL+N LYR+R++F+GQ + +E SNQ+   M+YL + D S  ++MYIN PGG VT  L ++D    +   V T CVG A  +A  +L+GG  G R A+P +R+ +  P G +RGQA D+  E+ E+ R+RD +      +T Q  E I  DL+R      ++A  YGLID +   P +KE+
Sbjct:    1 MPVGVPKVPYRLPGESAPQWVDLYNRLYRQRLLFMGQELGDELSNQLCGIMIYLFAEDPSIPLFMYINSPGGSVTSGLGVFDIATVMMQDVTTICVGIAASMASLVLSGGSTGQRLALPHARMMIHQPEGGSRGQASDVMYESSEVERLRDIVVDCYVERTHQSRETIIIDLNRDLFMSPRQARSYGLIDAVAL-PAVKEE 200          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_COFAR (ATP-dependent Clp protease proteolytic subunit OS=Coffea arabica GN=clpP PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.588e-42
Identity = 83/193 (43.01%), Postives = 126/193 (65.28%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   DD+K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  F+L GGE   R A P +R+ +  PA +    QA +   EA+ELL++R+ + +   ++TG+P   +++D+ R     + EA  YG++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQAVDSEISNQLIGLMIYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ZYGCR (ATP-dependent Clp protease proteolytic subunit OS=Zygnema circumcarinatum GN=clpP PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.910e-42
Identity = 79/193 (40.93%), Postives = 127/193 (65.80%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE    W+D++N LYR+R++F+GQ++D+E +NQ++  M+YL+  + SK +YMYIN PGG V   +++YD MQ +   V T C+G A  +  F+L GGE   R A+P +R+ +  PA +   GQA +   EA+E+L+++D + K   ++TG+P   I++D+ R     ++EA  YG++D +
Sbjct:    1 MPIGVPKVPFRIPGEEDASWIDVYNRLYRDRLLFLGQDVDDEIANQLIGIMIYLNGENQSKDMYMYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEISKRLALPHARVMIHQPASSFYEGQAGECMIEAEEVLKLKDCVTKVYMQRTGKPMAVISEDMERDVFMSAKEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SPIOL (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.910e-42
Identity = 83/193 (43.01%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   DD+K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  F+L GGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ + K   ++TG+P   +++D+ R     + EA  +G+ID +
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFLLEAEELLKLRETLTKVYGQRTGKPLWVVSEDMERDVFMSATEAQAHGIIDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_MARPO (ATP-dependent Clp protease proteolytic subunit OS=Marchantia polymorpha GN=clpP PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.690e-41
Identity = 82/193 (42.49%), Postives = 127/193 (65.80%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE    W+D++N LYRER++F+GQ +D+E +NQ++  M+YL+  D+SK +Y+YIN PGG V   +++YD MQ +   V T C+G A  +  F+L GGE   R A+P +R+ +  PA +   GQA +   EA+E+L++RD I K   ++TG+P   I++D+ R     ++EA  YG++D +
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAKEAKLYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_EPIVI (ATP-dependent Clp protease proteolytic subunit OS=Epifagus virginiana GN=clpP PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.766e-41
Identity = 82/193 (42.49%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARG-QADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV ++ PGE    WVD++N LYRER++F+GQ +D + SNQ++  M+YL   DD+K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  FLL GGE   R A P +R+ +  PA    G Q  +   EA+ELL++R+ + +   ++TG+P   I++D+ R     +++A  YG++D +
Sbjct:    1 MPIGVPKVPFQIPGEEDASWVDVYNRLYRERLLFLGQEVDSDISNQLIGLMVYLSIEDDTKEIYLFINSPGGWVIPGVAIYDTMQFVRPEVHTICMGLAASMGSFLLVGGEITKRLAFPHARVMIHQPASYFFGAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVISEDMERDVFMSAKDAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_TOBAC (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.918e-41
Identity = 81/193 (41.97%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   D++K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  F+L GGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ + +   ++TG+P   +++D+ R     + EA  YG++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PHYPA (ATP-dependent Clp protease proteolytic subunit OS=Physcomitrella patens GN=clpP PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.918e-41
Identity = 82/194 (42.27%), Postives = 129/194 (66.49%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWN-ALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE    W+D++N  LYRER++F+GQ++D+E +NQ++  M+YL+  D++K +Y+YIN PGG V   +++YD MQ +   V T C+G A  +  F+LAGGE   R A+P +R+ +  PA +   GQA +   EA+E+L++RDYI +   ++ G+P   I++D+ R     +QEA  YG++D +
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWIDVYNNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDENKDMYLYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILAGGEITKRIALPHARVMIHQPASSYYDGQAGECIMEAEEVLKLRDYITRVYVQRIGKPLWVISEDMERDVFMSAQEAKTYGIVDLV 194          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ANTFO3.406e-4243.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PANGI4.448e-4244.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NEPOL7.588e-4243.28ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COFAR7.588e-4243.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ZYGCR9.910e-4240.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SPIOL9.910e-4243.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MARPO1.690e-4142.49ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EPIVI3.766e-4142.49ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_TOBAC4.918e-4141.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PHYPA4.918e-4142.27ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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