CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_NICTO (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=clpP PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.918e-41
Identity = 81/193 (41.97%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   D++K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  F+L GGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ + +   ++TG+P   +++D+ R     + EA  YG++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_NICSY (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.918e-41
Identity = 81/193 (41.97%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   D++K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  F+L GGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ + +   ++TG+P   +++D+ R     + EA  YG++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LOTJA (ATP-dependent Clp protease proteolytic subunit OS=Lotus japonicus GN=clpP PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.918e-41
Identity = 82/193 (42.49%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ ++ E SNQ++  M+YL   DD K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  F+LAGG+   R A P +R+ +  PA +    Q  +   EA+ELL++R+ I +   ++TG+P   +++D+ R     + EA  YG++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVNSEISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFVLAGGKITKRLAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWLVSEDMERDVFMSAAEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LOBMA (ATP-dependent Clp protease proteolytic subunit OS=Lobularia maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.918e-41
Identity = 82/193 (42.49%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGEG   WVD++N LYRER+ F+GQ +D E SNQ+++ M+YL    D+K +Y++IN PGG V   +AIYDTMQ ++  V T C+G A  +A F+L GGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ I +   ++TG+P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGEITKRIAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CAPBU (ATP-dependent Clp protease proteolytic subunit OS=Capsella bursa-pastoris GN=clpP PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.918e-41
Identity = 82/193 (42.49%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGEG   WVD++N LYRER+ F+GQ +D E SNQ+++ M+YL    D+K +Y++IN PGG V   +AIYDTMQ ++  V T C+G A  +A F+L GGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ I +   ++TG+P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGEITKRIAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_ARATH (ATP-dependent Clp protease proteolytic subunit 1 OS=Arabidopsis thaliana GN=clpP1 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.918e-41
Identity = 83/193 (43.01%), Postives = 124/193 (64.25%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGEG   WVD++N LYRER+ F+GQ +D E SNQ+++ M+YL    D+K +Y++IN PGG V   +AIYDTMQ ++  V T C+G A  +A F+L GG    R A P +R+ +  PA +    Q  +   EA+ELL++R+ I +   ++TG+P   I++D+ R     + EA  YG++D +
Sbjct:    1 MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SOYBN (ATP-dependent Clp protease proteolytic subunit OS=Glycine max GN=clpP PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.424e-41
Identity = 82/193 (42.49%), Postives = 127/193 (65.80%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG P+V +R+PGE    WVD++N LYRER++F+GQ +D E SNQ+++ M+YL   +++K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  FLLAGGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ I +   ++TG+P   I++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPRVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVDSEISNQLISLMVYLSIEEENKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEAEELLKMRETITRVYVQRTGKPLWVISEDMERDVFMSAAEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PSINU (ATP-dependent Clp protease proteolytic subunit OS=Psilotum nudum GN=clpP PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.424e-41
Identity = 81/193 (41.97%), Postives = 127/193 (65.80%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE    WVD++N LYRER++F+GQ +D+E +NQ++  M+YL+  D+++ +Y YIN PGG V P +++YD MQ +   V T C+G A  +  F+L GGE   R A+P +R+ +  PA +   GQA +   EA+E+L++RD I +  +++T +P   I++D+ R     ++EA  YG++D I
Sbjct:    1 MPIGVPKVPFRLPGEEDAGWVDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDENRDMYSYINSPGGAVLPGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECIMEAEEILKLRDCITRVYAQRTEKPLWVISEDMERDIFMSAKEARAYGIVDLI 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ATRBE (ATP-dependent Clp protease proteolytic subunit OS=Atropa belladonna GN=clpP PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.424e-41
Identity = 81/193 (41.97%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ I+ E SNQ++  M+YL   D++K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  F+L GGE   R A P +R+ +  PA G    Q  +   EA+ELL++R+ + +   ++TG+P   +++D+ +     + EA  YG++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQGINSEISNQLIGLMVYLSIEDETKELYLFINSPGGWVIPGIAIYDTMQFVRPDVHTVCMGLAASMGSFILVGGEITKRLAFPHARVMMHQPASGYYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMEKDVFMSATEAQAYGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_VITVI (ATP-dependent Clp protease proteolytic subunit OS=Vitis vinifera GN=clpP PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.096e-40
Identity = 82/193 (42.49%), Postives = 122/193 (63.21%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE    W+D++N LYRER++F+GQ ++ E SNQ++  M+YL   D++K +Y +IN PGG V P +AIYDTMQ +   V T C+G A  +  F+L GG    R A P +R+ +  PA A    QA +   EA+ELL++R+ I K   ++TG+P   +++DL R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRNPGEDDISWIDVYNRLYRERLLFLGQEVESEISNQLIGLMIYLSIEDENKDLYFFINSPGGWVLPGIAIYDTMQFVPPEVHTICLGLAASMGSFILVGGTITKRLAFPHARVMIHQPAAAFYEAQAGEFVMEAEELLKLREIITKVYVQRTGKPLWVVSEDLERDVFMSATEAQTHGIVDLV 193          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_NICTO4.918e-4141.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NICSY4.918e-4141.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LOTJA4.918e-4142.49ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LOBMA4.918e-4142.49ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAPBU4.918e-4142.49ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_ARATH4.918e-4143.01ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SOYBN6.424e-4142.49ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSINU6.424e-4141.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ATRBE6.424e-4141.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VITVI1.096e-4042.49ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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