CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_YERP3 (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=clpP PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 70/188 (37.23%), Postives = 118/188 (62.77%), Query Frame = -1
Query:  252 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 812
            P V+ +T  GE S+   D+++ L +ER+IF+   +++  +N I A ML+L++ +  K +++YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TG+  E+I +D  R +   +++++EYGL+D +
Sbjct:   18 PMVVEQTSRGERSY---DIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_RICTY (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 70/172 (40.70%), Postives = 106/172 (61.63%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L +ER+IF+   +++  +N I+A +L+L++ +  K +YMYIN PGG VT  LAIYDTMQ +K  V T C+G A  +   LL GGE G R ++P SRI +  P+G  +GQA DI   A E L+++  + +  S+ T Q  + I K + R       EA ++GL+D II
Sbjct:   19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRIMIHQPSGGYKGQATDIEIHARETLKIKKLLNELYSKHTEQALKHIEKSMERDNFMSPGEAKKFGLVDNII 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_METFK (ATP-dependent Clp protease proteolytic subunit OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=clpP PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 70/180 (38.89%), Postives = 111/180 (61.67%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L +ER+IF+   +++  +N ++A +L+L++ +  K +Y YIN PGG VT  + IYDTMQ +K  V T CVG A  +   LLA G +G R  +P SR+ +  P G  +GQA DI   A E+L +R+ +   L+  TGQP EKI  D  R     +++++ YG++D++I
Sbjct:   30 GERSY---DIYSRLLKERIIFLVGPVNDATANLVVAQLLFLEAENPDKDIYFYINSPGGSVTAGMGIYDTMQFVKPDVSTLCVGQAASMGALLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFLREKLNHILASHTGQPVEKIALDTDRDNFMSAEQSVAYGIVDKVI 206          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LARHH (ATP-dependent Clp protease proteolytic subunit OS=Laribacter hongkongensis (strain HLHK9) GN=clpP PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 70/195 (35.90%), Postives = 116/195 (59.49%), Query Frame = -1
Query:  249 AMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 833
            A   +G   ++    G G   + D+++ L +ER++F+   + +E +N ++A ML+L+S +  K +++YIN PGG VT  L+IYDTM  +K  V T C+G A  +  FLL+ G KG R A+P SR+ +  P G  +GQA D    A E+L ++  + + ++   G+P E + +D  R     + +ALEYGLID+++
Sbjct:   13 APQALGLVPMVVEQSGRGERAY-DIYSRLLKERIVFMVGPVTDETANLVVAQMLFLESENPDKDIHLYINSPGGSVTAGLSIYDTMNFIKPSVSTLCIGQAASMGAFLLSAGAKGKRFALPNSRVMIHQPLGGFQGQASDFEIHAREILTLKRKLNELMAAHCGRPLEDLERDTDRDNFMNAAQALEYGLIDQVL 206          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_HAHCH (ATP-dependent Clp protease proteolytic subunit OS=Hahella chejuensis (strain KCTC 2396) GN=clpP PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 75/190 (39.47%), Postives = 116/190 (61.05%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ER+IF+   +++  +N ++A +L+L+S +  K +++YIN PGG VT  L+IYDTMQ +K  V T C+G A  +   LL+GG  G R  +P SR+ +  P  G  +GQA DI   A E+L +R+ +   LS+ TGQ  E I +D  R K   ++ A  YGLID ++
Sbjct:   12 PMVVEQTARGERSY---DIYSRLLKERIIFLVGQVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQAASMGALLLSGGAAGKRYCLPHSRVMIHQPLLGGLQGQASDIEIHAKEILLLREKLNNILSKHTGQDIETIARDTDRDKFMDAEMAKNYGLIDSVL 198          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CHRSD (ATP-dependent Clp protease proteolytic subunit OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=clpP PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 69/172 (40.12%), Postives = 106/172 (61.63%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L +ERVIF+   +++  +N ++A ML+L+S +  K +++YIN PGG VT  ++IYDTMQ +K  V T CVG A  +   LLAGG  G R  +P SR+ +  P G  +GQA DI     E+L +R  + + L++ TGQ  E + +D  R       +A+EYGLID ++
Sbjct:   29 DIYSRLLKERVIFLIGPVEDYMANLVVAQMLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTVCVGQAASMGALLLAGGAAGKRYCLPHSRMMIHQPLGGYQGQAADIEIHTKEILNIRQQLNEILAKHTGQDAETVARDTDRDNFMNGTQAVEYGLIDAML 200          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_FRASC (ATP-dependent Clp protease proteolytic subunit 3 OS=Frankia sp. (strain CcI3) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 78/189 (41.27%), Postives = 113/189 (59.79%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P ++ RT  GE S   +D ++ L +ER++F+G  ID+  +N ++A +L+L+S D  + + +YIN PGG  T   AIYDTMQ ++  + T C+G A   A  LLA G  G R A+  SRI +  P+    GQ+ DI  +A E+LRVR      L+R TG+   +I +D  R K F + EA EYGLID +I
Sbjct:   14 PNIVERTSRGEYS---MDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQSSDIEIQAREILRVRALQETMLARHTGRTETEIRRDTERDKIFSADEAEEYGLIDEVI 199          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 73/176 (41.48%), Postives = 109/176 (61.93%), Query Frame = -1
Query:  243 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG--GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 764
            DL + L  ER++++G  I++  +  ++A +LYL+S D++K + +YIN PG  G  T   A+YDTM+ ++ P+ T C+G A   +  L+A G KG R ++P SRI L  P G ARGQA DI   A ELL  +  + + LS  TG+  E+I KD  R+     QEA+ YGLID+++ P
Sbjct:   28 DLPSLLLNERIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVAGFETSAFAVYDTMRHVRMPIKTICLGLAGGFSALLMAAGTKGQRMSLPNSRIILYQPYGGARGQATDINIRAQELLTTKRTLNQLLSIHTGKTVEQIDKDTERLFYMSPQEAVSYGLIDKVLEP 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_CORGL (ATP-dependent Clp protease proteolytic subunit 2 OS=Corynebacterium glutamicum GN=clpP2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.195e-32
Identity = 70/181 (38.67%), Postives = 113/181 (62.43%), Query Frame = -1
Query:  249 PGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 791
            PG G+    D+++ L  ER+IF+G  +D+E +N++ A +L L + D ++ + +YIN PGG VT  +AIYDTM+     + T+ +G A  +  FLL+GG KG R A+P +RI +  P+    G A DI  +A++    +  + + ++  TGQ FE+I+KD  R + F +QEA +YGL+D +I
Sbjct:   16 PGFGN----DVFDRLLSERIIFLGSQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYDTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAIQAEQFAATKREMAQLIAEHTGQTFEQISKDSDRDRWFTAQEAKDYGLVDHVI 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPK (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain KT2440) GN=clpP PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.173e-32
Identity = 68/171 (39.77%), Postives = 105/171 (61.40%), Query Frame = -1
Query:  252 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 764
            D+++ L +ERVIF+   +++  +N ++A +L+L++ +  K +++YIN PGG VT  ++IYDTMQ +K  V T C+G A  +  FLLA G KG R  +P SR+ +  P G  +GQA DI   A E+L ++  + + L+  TGQ  E I +D  R     +  A EYGLID +
Sbjct:   35 DIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYGLIDSV 205          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_YERP33.195e-3237.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RICTY3.195e-3240.70ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_METFK3.195e-3238.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LARHH3.195e-3235.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAHCH3.195e-3239.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHRSD3.195e-3240.12ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_FRASC3.195e-3241.27ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_GLOVI3.195e-3241.48ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_CORGL3.195e-3238.67ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PSEPK4.173e-3239.77ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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