CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ANGEV (ATP-dependent Clp protease proteolytic subunit OS=Angiopteris evecta GN=clpP PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39
Identity = 82/193 (42.49%), Postives = 126/193 (65.28%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE    WVD+ N LYRER++F+GQ +D+E +NQ++  M+YL+  D+++ +Y+YIN PGG V P +++YD MQ +   V T C+G A  +   +L GGE   R A+P +R+ +  PA +   GQA +   EA+E+L++RD I K   ++TG+P   I++D+ R     ++EA  YG++D I
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWVDV-NRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDETQDMYLYINSPGGAVLPGISVYDAMQFVVPDVHTICMGLAASMGSSILTGGEITKRIALPHARVMIHQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAEEAKAYGIVDLI 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMP (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39
Identity = 83/184 (45.11%), Postives = 119/184 (64.67%), Query Frame = -1
Query:  231 GSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 782
            GS +  D+++ L RER+IF+G+ +  + +N+I+A +L+L++ D  K +YMYIN PGG V   L I+DTMQ +K  + T CVG A  +  FLLA G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ +  ELS +TG+  E I  D  R      QEA+EYGLID ++    +K
Sbjct:   11 GSERVFDIYSRLLRERIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYMYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARGQASDIRIQADEILYLKERLNTELSERTGKELETIKGDTDRDFYMSPQEAVEYGLIDLVLDKKPVK 194          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMT (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.582e-39
Identity = 78/171 (45.61%), Postives = 115/171 (67.25%), Query Frame = -1
Query:  252 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 764
            D+++ L RER++F+G+ +  + +N+I+A +L+L++ D  K +++YIN PGG V   L I+DTMQ +K  + T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR +ADE+L ++D + KELS +TGQP E+I +D  R       EA+EYG+ID +
Sbjct:   17 DIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEADDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSLLHSRIMIHQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQPIERIREDTDRDFYMSPSEAIEYGIIDNV 187          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CHLCH (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.066e-39
Identity = 85/196 (43.37%), Postives = 125/196 (63.78%), Query Frame = -1
Query:  225 VLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII--RPPRIKED 806
            ++  T G G   + D+++ L RER+IF+G  IDE  +  I+A +++L+S D  + +Y+YIN PGG V+  L IYDTMQ ++  + T CVG A  +  FLLA G KG R+++P SRI +  P+G A+GQ  DI  +A E+ ++R  + + L++ TGQP EK+ +D  R +    QEALEYGLID I   RP   K+D
Sbjct:   31 MVIETSGRGERAF-DIFSRLLRERIIFLGTGIDEHVAGLIMAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPEISTVCVGMAASMGAFLLASGNKGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSERDRWMNPQEALEYGLIDAIFEKRPTPEKKD 225          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SOLLC (ATP-dependent Clp protease proteolytic subunit OS=Solanum lycopersicum GN=clpP PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.699e-39
Identity = 79/191 (41.36%), Postives = 121/191 (63.35%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MPIG P+V++R PG+    WVD++N LYRER++F+GQ I  E SNQ++  MLYL   D++K +Y+++N PGG V P +AIYDTMQ ++  + T C+G A  +  F+LAGG+   R A P +R+ +  P +G    Q  +   EA E+ ++R+ + +  + KTGQP   I +D+ R     + EA  YG++D
Sbjct:    1 MPIGVPRVVFRNPGDPISSWVDIYNRLYRERLLFLGQGIGTELSNQLIGLMLYLSMEDENKDLYLFVNSPGGWVIPGIAIYDTMQFVRPDIHTICLGLAASMGSFILAGGQLTKRIAFPHARVMIHEPYSGFYMAQVGEFVLEAIEMAKLRETLTRVYAEKTGQPVWVIHEDMERDIFMSATEAQAYGIVD 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PLAOC (ATP-dependent Clp protease proteolytic subunit OS=Platanus occidentalis GN=clpP PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.699e-39
Identity = 79/193 (40.93%), Postives = 123/193 (63.73%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P +AIYDTMQ +   V T C+G A  +  F+L GGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ + +   ++TG P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDAIWVDVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=clpP PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.699e-39
Identity = 79/193 (40.93%), Postives = 122/193 (63.21%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MP+G PKV +R PGE    WVDL+N LYR+R++F+GQ+++ E SNQI+  M+YL   D +K  Y++IN PGG V P + ++DTMQ +   V T C+G A  +  F+L GGE   R A P +R+ +  PA + ++G+  +   E+ ELL +R+ I K   ++TG+P   I++DL R     + EA  +G++D +
Sbjct:    1 MPVGVPKVPFRLPGEEDASWVDLYNRLYRQRLLFLGQDVNNEISNQIMGLMVYLSIEDGTKDQYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFSKGKTGEFVLESTELLNLRETITKVYVQRTGKPLWVISEDLERDVFMSAPEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.525e-39
Identity = 79/172 (45.93%), Postives = 114/172 (66.28%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R++F+G  ID+  +N ++A +L+L++ D  K VY+YIN PGG VT  LAIYDTMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.525e-39
Identity = 79/172 (45.93%), Postives = 114/172 (66.28%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R++F+G  ID+  +N ++A +L+L++ D  K VY+YIN PGG VT  LAIYDTMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.525e-39
Identity = 79/172 (45.93%), Postives = 114/172 (66.28%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R++F+G  ID+  +N ++A +L+L++ D  K VY+YIN PGG VT  LAIYDTMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ANGEV1.211e-3942.49ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_PROMP1.211e-3945.11ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_PROMT1.582e-3945.61ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CHLCH2.066e-3943.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SOLLC2.699e-3941.36ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PLAOC2.699e-3940.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CUCSA2.699e-3940.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ3.525e-3945.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP13.525e-3945.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA3.525e-3945.93ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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