CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ARAHI (ATP-dependent Clp protease proteolytic subunit OS=Arabis hirsuta GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.525e-39
Identity = 80/193 (41.45%), Postives = 123/193 (63.73%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGEG   WVD++N LYRER+ F+GQ +D E SNQ+++ M+YL    D+K +Y++IN PGG V   +AIYDTMQ ++  V T  +G A  +A F+L GG    R A P +R+ +  PA +    Q  +   EA+ELL++R+ I +   ++TG+P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTIGMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_NYMAL (ATP-dependent Clp protease proteolytic subunit OS=Nymphaea alba GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.603e-39
Identity = 78/193 (40.41%), Postives = 124/193 (64.25%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   D+++ +Y++IN PGG V P +AIYD MQ +   V T C+G A  +  F+L GGE   R A P +R+ +  PA +    QA +   EA+ELL++R+ + +   ++TG+P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDIYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYLFINSPGGWVIPGIAIYDAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHARVMIHQPASSFYEAQAGEFILEAEELLKLREILTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_NUPAD (ATP-dependent Clp protease proteolytic subunit OS=Nuphar advena GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.603e-39
Identity = 78/193 (40.41%), Postives = 124/193 (64.25%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   D+++ +Y++IN PGG V P +AIYD MQ +   V T C+G A  +  F+L GGE   R A P +R+ +  PA +    QA +   EA+ELL++R+ + +   ++TG+P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDIYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYLFINSPGGWVIPGIAIYDAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHARVMIHQPASSFYEAQAGEFILEAEELLKLREILTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.603e-39
Identity = 85/189 (44.97%), Postives = 122/189 (64.55%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+W+ L ++R IFIG  ID+  +N ++A ML+L++ D  K +++YIN PGG +T  +AIYDTMQ +K  V T C+G A  +  FLLA G KG R ++P +RI +  P G  +GQA DI   A E+LR+RD + + L++ TGQP EKI +D  R     + EA EYG+ID +I
Sbjct:    6 PIVIEQTSRGERSY---DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_MORIN (ATP-dependent Clp protease proteolytic subunit OS=Morus indica GN=clpP PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.012e-39
Identity = 81/193 (41.97%), Postives = 122/193 (63.21%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PG+    WVD+ N LYRER++F+GQ +D E SNQ++  M++L   DD+K +Y++IN PGG V P L IYDTMQ ++  V T C+G A  +  F+L GGE   R A P +R+ +  PA +    Q  +   EA+ELL++R+ I +   ++TG+    I++D+ R     + EA  +GL+D +
Sbjct:    1 MPIGVPKVPFRSPGDEDASWVDVINRLYRERLLFLGQEVDSEISNQLIGLMVFLSIEDDTKDLYLFINSPGGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKSLWVISEDMERDVFMSATEAQAHGLVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CALFG (ATP-dependent Clp protease proteolytic subunit OS=Calycanthus floridus var. glaucus GN=clpP PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.012e-39
Identity = 79/193 (40.93%), Postives = 122/193 (63.21%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   DD+K +Y++IN PGG V P +AIYDTMQ +   V T C+G A  +  F+L GGE   R A P +R+ +  PA +       +   EA+ELL++R+ + +   ++TG P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLTIEDDTKDLYLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.012e-39
Identity = 78/172 (45.35%), Postives = 114/172 (66.28%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L R+R+IF+G  +D++ +N I+A MLYL+S D  K +Y+YIN PGG V   +AIYDTMQ ++  V T C+G A  +  FLLAGG KG R A+P +RI +  P G A+G A DI  +A E+L +++ +   L+  TGQP E+I +D  R      ++A EYGLID++I
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.012e-39
Identity = 78/172 (45.35%), Postives = 114/172 (66.28%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L R+R+IF+G  +D++ +N I+A MLYL+S D  K +Y+YIN PGG V   +AIYDTMQ ++  V T C+G A  +  FLLAGG KG R A+P +RI +  P G A+G A DI  +A E+L +++ +   L+  TGQP E+I +D  R      ++A EYGLID++I
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PINTH (ATP-dependent Clp protease proteolytic subunit OS=Pinus thunbergii GN=clpP PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.852e-39
Identity = 79/191 (41.36%), Postives = 119/191 (62.30%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MP+G PKV +R PG+    WVDL+N LYRER++F+ Q+I+ E +NQ++  M+YL + D +K ++ +IN PGG V P + ++D MQ++   V T C+G A  +  F+L GGE   R A+P +RI +  PA +   G A D  NE+  +  +RDYI +    +T QP E I +DL+R     + EA  YG++D
Sbjct:    1 MPVGVPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIFSFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARIMIHQPASSYYDGSAADFHNESKHVTMLRDYITRCYIERTDQPGEVIQRDLNRDVFMSATEAQAYGIVD 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CITSI (ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=clpP PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.026e-38
Identity = 78/193 (40.41%), Postives = 123/193 (63.73%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARG-QADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV YR+PG+    WVD++N LYRER++F+GQ ++ + SNQ++  M+YL   +++K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A  +  FLLA G    R A P +R+ +  P GA  G Q  +   + +ELLR+R+ +     +++G+P   +++D+ R     + EA  +GL+D +
Sbjct:    1 MPIGVPKVPYRSPGDKHPSWVDIYNRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHARVMIHQPIGAFYGAQTGEFILDTEELLRLREILTMVYVQRSGKPLWVVSEDMERDTFMSATEAQAHGLVDLV 193          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ARAHI3.525e-3941.45ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NYMAL4.603e-3940.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NUPAD4.603e-3940.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ4.603e-3944.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MORIN6.012e-3941.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CALFG6.012e-3940.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJB6.012e-3945.35ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA6.012e-3945.35ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PINTH7.852e-3941.36ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CITSI1.026e-3840.41ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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