CN186183

Overview
NameCN186183
Unique NameCN186183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186183_ssr121 microsatellite CN186183_ssr121:121..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:291..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.256e-49
Identity = 98/159 (61.64%), Postives = 118/159 (74.21%), Query Frame = -1
Query:  214 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 687
            MS+IPS FG RR+NV +PFSLD+WDPF  + L ++   +    +ET+ FAN  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT           K+I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.820e-48
Identity = 103/157 (65.61%), Postives = 117/157 (74.52%), Query Frame = -1
Query:  214 RRTNVFDPFSLDVWDPFDGFL-----SSALTNAPSSAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 657
            RR+NVFDPFSLD+WDPFDGF      SS+ +  PS  R    ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.917e-48
Identity = 99/160 (61.88%), Postives = 116/160 (72.50%), Query Frame = -1
Query:  214 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 687
            MSLIPSIFGG R+NVFDPFSLD+WDPF  F      + P+S+   E S F N R+DWKET +AHV KAD+PGL+         + R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT           K IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.917e-48
Identity = 103/159 (64.78%), Postives = 119/159 (74.84%), Query Frame = -1
Query:  214 MSLIPSIFGGRR-TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 687
            MSLIP IFG RR T+VFDPFS+DV+DPF       L    S++ ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.180e-47
Identity = 90/139 (64.75%), Postives = 109/139 (78.42%), Query Frame = -1
Query:  271 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 687
            MS+IPS F  +R+N+FDPFSLD WDPF G +S+        ARET+   NARIDWKETP+AHV KADLPG++         +GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.013e-47
Identity = 96/157 (61.15%), Postives = 114/157 (72.61%), Query Frame = -1
Query:  214 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSS---------ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 657
            RR+NVFDPFSLD+WDPFDGF   + + +  S         + ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.628e-47
Identity = 95/148 (64.19%), Postives = 113/148 (76.35%), Query Frame = -1
Query:  214 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 657
            RR+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.856e-47
Identity = 94/148 (63.51%), Postives = 113/148 (76.35%), Query Frame = -1
Query:  214 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 657
            RR+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.648e-47
Identity = 94/150 (62.67%), Postives = 112/150 (74.67%), Query Frame = -1
Query:  214 RRTNVFDPFSLDVWDPFDGFLSSALTNA--PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 657
            RR+NVFDPFSLD+WDPFDGF   + + +  P +  + + FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.225e-46
Identity = 100/159 (62.89%), Postives = 119/159 (74.84%), Query Frame = -1
Query:  214 MSLIPSIFGGRRTN-VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 687
            MSLIP IFG RR++ +FDPFS+DV+DPF       L    +++ ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPF-----RELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CN186183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP12_DAUCA6.256e-4961.6418.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ1.820e-4865.6117.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN6.917e-4861.8817.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE6.917e-4864.7817.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_HELAN1.180e-4764.7517.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS181_ORYSJ2.013e-4761.1518.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ2.628e-4764.1916.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ5.856e-4763.5116.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS174_ORYSJ7.648e-4762.6717.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLPE2.225e-4662.8917.7 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186183 ID=CN186183; Name=CN186183; organism=Citrus sinensis; type=EST; length=720bp
TGCATCCACTTTTACATTTAAAAAACTAGTCCCCTATAGGGAGACTGGCT
CCTGAAGCTCTTGCAAACACACCCCTTTAATCACATCAAATTAAACAGGG
GGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCT
TTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTA
CACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTC
TCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGC
CTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGA
ACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCC
TGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAAC
CTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATA
CATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGG
GATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAA
CCCGTCGAAAGGATCCCATACATCTAATGAAAATGGATCGAACACGTTGG
TTCTTCGGCCACCGAATATGCTTGGAATGAGTGACATTATGGCAAACTGG
GGCGCTAATTAAATGCTCAA
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