CN186183

Overview
NameCN186183
Unique NameCN186183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186183_ssr121 microsatellite CN186183_ssr121:121..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:291..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 77/151 (50.99%), Postives = 91/151 (60.26%), Query Frame = -1
Query:  214 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 657
            R  NV DP S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R         +G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT           KAI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.165e-25
Identity = 60/134 (44.78%), Postives = 86/134 (64.18%), Query Frame = -1
Query:  268 GGRRTNVFDPFSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 663
            GG      +P S+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R         E ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = -1
Query:  268 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 537
            AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  268 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 543
            ++AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.515e-23
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = -1
Query:  271 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 561
            R+TS   + AR+DWKET + H    D+PGL+         E  +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = -1
Query:  214 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 435
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -1
Query:  268 VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 645
            +FD  + D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++         EG +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:  271 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 558
            + +  + AR+DW+ET  AH    D+PG+R         + R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = -1
Query:  268 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 576
            A ++A E +  A AR DWKETP+AHV   D+PG+R         E  R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  268 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 579
            NAPS    R+    A    D KE P ++VF  D+PGL+         E  +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CN186183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ3.813e-3050.9916.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ2.165e-2544.7818.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN6.300e-2557.7822.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA6.300e-2555.4322.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH4.515e-2352.0422.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.716e-2274.32Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ1.112e-2144.8817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ1.503e-1846.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ2.564e-1845.9521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE6.981e-1642.4517.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186183 ID=CN186183; Name=CN186183; organism=Citrus sinensis; type=EST; length=720bp
TGCATCCACTTTTACATTTAAAAAACTAGTCCCCTATAGGGAGACTGGCT
CCTGAAGCTCTTGCAAACACACCCCTTTAATCACATCAAATTAAACAGGG
GGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCT
TTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTA
CACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTC
TCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGC
CTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGA
ACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCC
TGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAAC
CTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATA
CATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGG
GATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAA
CCCGTCGAAAGGATCCCATACATCTAATGAAAATGGATCGAACACGTTGG
TTCTTCGGCCACCGAATATGCTTGGAATGAGTGACATTATGGCAAACTGG
GGCGCTAATTAAATGCTCAA
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