CN186183

Overview
NameCN186183
Unique NameCN186183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186183_ssr121 microsatellite CN186183_ssr121:121..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:291..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  268 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 528
            D KE P A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  268 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 579
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  268 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 543
            A   +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = -1
Query:  271 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 609
            F G     L   P      S  A A +DW ETP +HV + ++PGL          +G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CN186183 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  268 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 579
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of CN186183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_MAIZE5.532e-1345.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS177_ARATH5.532e-1338.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS178_ORYSJ7.225e-1338.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ1.609e-1236.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH7.988e-1236.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186183 ID=CN186183; Name=CN186183; organism=Citrus sinensis; type=EST; length=720bp
TGCATCCACTTTTACATTTAAAAAACTAGTCCCCTATAGGGAGACTGGCT
CCTGAAGCTCTTGCAAACACACCCCTTTAATCACATCAAATTAAACAGGG
GGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCT
TTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTA
CACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTC
TCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGC
CTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGA
ACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCC
TGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAAC
CTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATA
CATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGG
GATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAA
CCCGTCGAAAGGATCCCATACATCTAATGAAAATGGATCGAACACGTTGG
TTCTTCGGCCACCGAATATGCTTGGAATGAGTGACATTATGGCAAACTGG
GGCGCTAATTAAATGCTCAA
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