CN186181
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.174e-32 Identity = 76/174 (43.68%), Postives = 107/174 (61.49%), Query Frame = -1 Query: 227 VKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 748 +KTWF+QP +I PRP AG LR VV +YN K R GRGF+L+ELKAAGI + A TIG++VD RR N++ EGL++N RLK YKAKL++FP++A K GDS+ EEL A Q++G +P++ E +VT + + + LR ER ++++ G R Sbjct: 22 IKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.616e-32 Identity = 80/179 (44.69%), Postives = 105/179 (58.66%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELV--KVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q V+TWFNQP K+FPRP A L+PVV G T++YNMK+RAGRGFTLEELKAAG+ + A TIG++VD RR N++ + L N QRLK Y++KLV+FPR+ K G++ EE+A A Q P+ + T E K T+ K F AY L+ + G R Sbjct: 18 QMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.220e-23 Identity = 71/177 (40.11%), Postives = 97/177 (54.80%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q V+ F+Q KI PRP LRPVV T+KYN K+RAGRGFTL ELKA GI K A TIG+SVDHRR+N+S E +NV RL+ YK+KLV+F ++ + + +++ V+ P APE + V+V + AY LR+ R +++ G R Sbjct: 19 QERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQP----APES-GLRAVEVPEQ----TAYRTLRLARNEKKYKGIR 185
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.899e-23 Identity = 73/177 (41.24%), Postives = 94/177 (53.11%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q VK FNQ KI PRP LRPVV T+KYN K+RAGRGFT E+KAAG+ A TIG++VDHRR+N++ E + NVQRLK Y++K++VFPR + + L+TA PIA +P VE AY LR+ R +R+ G R Sbjct: 19 QERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGKV----PETEQVLSTAAA-----FPIA--QPAVETETRAVQDNGESAYRTLRMARSEKRYKGIR 183
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.899e-23 Identity = 75/177 (42.37%), Postives = 97/177 (54.80%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q VK F+Q KI PRP LRPVV T+KYN K+RAGRGFTL E+KAAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR KA ++ A AT PIA VE V + +S A+ LR+ R ++ G R Sbjct: 19 QERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRGIR 183
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.945e-23 Identity = 75/177 (42.37%), Postives = 97/177 (54.80%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q VK F+Q KI PRP LRPVV T+KYN K+RAGRGFTL E+KAAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR KA ++ A AT PIA VE V + +S A+ LR+ R ++ G R Sbjct: 19 QERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRGIR 183 The following BLAST results are available for this feature:
BLAST of CN186181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186181 ID=CN186181; Name=CN186181; organism=Citrus sinensis; type=EST; length=757bpback to top |