CN186181

Overview
NameCN186181
Unique NameCN186181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:108..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.174e-32
Identity = 76/174 (43.68%), Postives = 107/174 (61.49%), Query Frame = -1
Query:  227 VKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 748
            +KTWF+QP               +I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P++      E  +VT   +  + +  LR ER ++++ G R
Sbjct:   22 IKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.616e-32
Identity = 80/179 (44.69%), Postives = 105/179 (58.66%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELV--KVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  V+TWFNQP               K+FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIG++VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T E    K T+  K F AY  L+      +  G R
Sbjct:   18 QMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.220e-23
Identity = 71/177 (40.11%), Postives = 97/177 (54.80%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  V+  F+Q                KI PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIG+SVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P    APE   +  V+V +      AY  LR+ R  +++ G R
Sbjct:   19 QERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQP----APES-GLRAVEVPEQ----TAYRTLRLARNEKKYKGIR 185          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.899e-23
Identity = 73/177 (41.24%), Postives = 94/177 (53.11%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  VK  FNQ                KI PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIG++VDHRR+N++ E  + NVQRLK Y++K++VFPR  +         + L+TA        PIA  +P VE            AY  LR+ R  +R+ G R
Sbjct:   19 QERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGKV----PETEQVLSTAAA-----FPIA--QPAVETETRAVQDNGESAYRTLRMARSEKRYKGIR 183          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.899e-23
Identity = 75/177 (42.37%), Postives = 97/177 (54.80%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  VK  F+Q                KI PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR     KA ++     A AT       PIA     VE   V  + +S  A+  LR+ R  ++  G R
Sbjct:   19 QERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRGIR 183          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.945e-23
Identity = 75/177 (42.37%), Postives = 97/177 (54.80%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  VK  F+Q                KI PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR     KA ++     A AT       PIA     VE   V  + +S  A+  LR+ R  ++  G R
Sbjct:   19 QERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRGIR 183          
The following BLAST results are available for this feature:
BLAST of CN186181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL1.174e-3243.6860S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_DICDI2.616e-3244.6960S ribosomal protein L13 OS=Dictyostelium discoid... [more]
RL13_CANAL2.220e-2340.1160S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13_SACEX2.899e-2341.2460S ribosomal protein L13 OS=Saccharomyces exiguus... [more]
RL13A_YEAST2.899e-2342.3760S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13B_YEAST4.945e-2342.3760S ribosomal protein L13-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186181 ID=CN186181; Name=CN186181; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTCAAACCAAAACAACATTGGATAGGCCCTTTGCA
AATAATATAACCAAGAAATCTTCCCACATTCAAAATAAAATAACAATTTC
AAGCCTAAAGCTAACAGATTGAAATCACTATAACAAAATGCCAAAAACAG
GCCCACATTCAAAGTGTTGCTTAAACAAGTTTTTTTACTTCTTCTCTTCC
TTTTCAGCCTCTGCAGCCTTCTTCATCCTGGCACCAAAATGGCGCTCGTT
CACACGCTCGATACGGAGTTTGTCATAAGCCTTGAAGGACTTCATATCTT
GAGTAACCTTAACAAGCTCGACAGTAGGCTTCTCAGGAGCAATGGGCATG
TAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGGGCAGAATC
ACCAGCCTTGAACTTGCGAGCACGTCTTGGGAAAACAACCAACTTAGCCT
TGTAAGTCTTGAGCCTCTGAACATTAGATTGAAGACCCTCAAGAGAACGG
TTCTTGCGTCGATGATCGACTGAAACACCAATTGTCGGAGCCAGTTTCTT
GGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGCCTCTGCCAGCCC
TTAATTTCATGTTGTATTTCAAAGTCTGGCCATGAACGACGGGACGAAGC
GGCCCAGCAGTAGGGCGAGGGAAGATTTTAACGGCCTTCTTTTGACGAGC
GACTCGTCGTCGATTTTTGCGAGCAGGTTGGTTGAACCAAGTCTTGACAT
AGTTCTG
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