CV998068

Overview
NameCV998068
Unique NameCV998068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1034
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6985 contig Csv1_Contig6985:511..1544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_GEOSW (NADPH dehydrogenase OS=Geobacillus sp. (strain WCH70) GN=namA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.089e-19
Identity = 81/264 (30.68%), Postives = 121/264 (45.83%), Query Frame = -1
Query:  276 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLY----MAESLNKYGI----LYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGT---FLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLP 1034
            E V+  + +   V   G     Q+ H GR S  D +    + I  ++K  TP               + +T  +I + +  F+  AR A EAGFD IE+HGAHG+LI++F+    N R D+YGGS ENR RF  EI++AV  E+    + +R+S       + D +PE L +      A+ + + G+    +    V P    V    + P +    R+A   T    L+  G   E+    +  GRADLV   R  L NP  P
Sbjct:   80 EHVDGLRELASLVKEHGAKIGIQLAHAGRKSEVDGEIIAPSAIPFSEKTRTP---------------KEMTKADIEETIQAFQNGARRAKEAGFDIIEIHGAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEIIDAV-REVWDGPLFVRIS-------ASDYHPEGLTVKDYVPYAKRMKEQGVDLIDVSSGAVVPAKIRVYPGYQVPFAETIRREANIATGAVGLITSGLQAEE---ILRNGRADLVFLARELLRNPYWP 317          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACHD (NADPH dehydrogenase OS=Bacillus halodurans GN=namA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.975e-19
Identity = 78/257 (30.35%), Postives = 117/257 (45.53%), Query Frame = -1
Query:  273 VDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGI--LYCH--MVEPRMKTVGEKSECPHSLLPMRKAFK--------GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 1007
            V+ +HA G     Q+ H GR +  D                 P I  + +   +   P  +T ++I + +  F+L A  A +AGFD IE+HGAHG+LI++F+    N RTD YGGSLENR R   EI+  +   +    + +R+S  A Y E G+   + + L  A+ + K GI  + C    V P    V      P   +P+ +A +           L+  G   E+    +   RADL+   R  L NP  PR
Sbjct:   89 VERIHAHGAKAAIQLAHAGRKAELD----------------GPIIAPSAISYDKMKTPDAMTEEQISETIEAFKLGALRAKKAGFDIIEIHGAHGYLINEFLSPLTNKRTDAYGGSLENRYRLLREIISEIQT-VWDGPLFVRISA-AEYAEGGNELSDFITL--AKWMKKQGIDLIDCSSGAVVPAPIPV-----YPGYQVPLAEAIRHEANIATGAVGLITSGIQAEE---ILQNERADLIFVARELLRNPYWPR 317          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACP2 (NADPH dehydrogenase OS=Bacillus pumilus (strain SAFR-032) GN=namA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.462e-18
Identity = 84/278 (30.22%), Postives = 131/278 (47.12%), Query Frame = -1
Query:  234 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGL---YMAESLNKYGILYCHMVEPRMKTV-GEKSECPHSLLPMRKAFKGTF-LVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR------RFEFNGPLNKYNR 1034
            E +E +  + + + A G     Q+ H GR +  D   +  AP S    P   Q +T          P +++ D+I   V  F+ AA  A +AGFD IE+HGAHG+LI++F+    N RTD YGGS ENR RF  E+V AV NE+    + +R+S  ++Y   G    + +G+      + ++   +    +V+ R+ T  G +      +        G   L+  G   E+    +   RADL+  GR FL +P  P+      R    GP  +Y+R
Sbjct:   80 EHIEGFASLNEQIKAYGTKTAIQLAHAGRKAELD--GDILAPSSI---PFDEQSKT----------PVQMSVDQIKDTVQAFQDAAVRAKKAGFDIIEIHGAHGYLINEFLSPLANHRTDDYGGSPENRYRFLREVVNAV-NEVWDGPLFVRVSA-SDYTTKGLDIADYIGIATWLKEQGVDLIDVSSGAVVQARISTFPGYQVTFAEKIKEGAGIQTGAVGLITSGVQAEE---ILRNQRADLIFIGREFLRDPYFPKTAAEELRTSIEGP-RQYDR 336          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_GEOKA (NADPH dehydrogenase OS=Geobacillus kaustophilus GN=namA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.521e-18
Identity = 77/264 (29.17%), Postives = 120/264 (45.45%), Query Frame = -1
Query:  276 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALG----LYMAESLNKYGI----LYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGT---FLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLP 1034
            + +   + +V  V   G     Q+ H GR S    +    + +   D   TP               + +T  +I + V  F+  AR A EAGFD IE+H AHG+LI++F+    N R D+YGGS ENR RF  E+++AV  E+    + +R+S       + D +P+ L     +  A+ + + G+    +    + P    V    + P + L  R+A   T    L+  G+  E+    +  GRADLV  GR  L NP  P
Sbjct:   80 DHIAGLRELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTP---------------KEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAV-REVWDGPLFVRIS-------ASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEE---ILQNGRADLVFLGRELLRNPYWP 317          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACA2 (NADPH dehydrogenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=namA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.712e-18
Identity = 57/163 (34.97%), Postives = 91/163 (55.83%), Query Frame = -1
Query:  546 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESG 1034
            + +E +  + + V A+G     Q+ H GR +  +++ +  AP +    P   Q +T          P  +TT++I + + +F+ AA  A EAGFD IELH AHG+L+ +F+    N RTD+YGGS ENR RF  E +EAV  E+    + +R+S  ++Y + G
Sbjct:   80 DHIEGFAKLTEQVKAQGSKIGIQLAHAGRKA--ELEGDIYAPSAI---PFDEQSKT----------PAEMTTEQIKETIQEFKQAAARAKEAGFDIIELHAAHGYLMHEFLSPLSNHRTDEYGGSHENRYRFLGETIEAV-KEVWDGPLFVRISA-SDYTDKG 225          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_LISMF (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=namA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.114e-16
Identity = 73/257 (28.40%), Postives = 114/257 (44.36%), Query Frame = -1
Query:  285 EQVEAWKPIVDAVHAKGGIFFCQIGHVGR---VSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYD----REDGNKAIAEGRADLVVYGRLFLANP 1034
            EQV A K +VD +H  G     Q+ H GR   +  + + P+  A    +DKP+                   LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S   +Y   G    + +    A+ +   G+    +    +  V       + +    +  +G  +  G        E   + +   RADL++ GR  L NP
Sbjct:   79 EQVPALKKLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIAFDEKSDKPV------------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSA-TDYAHGGLQLEDHIP--FAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIVGRELLRNP 313          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_LISMC (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=namA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.114e-16
Identity = 73/257 (28.40%), Postives = 114/257 (44.36%), Query Frame = -1
Query:  285 EQVEAWKPIVDAVHAKGGIFFCQIGHVGR---VSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYD----REDGNKAIAEGRADLVVYGRLFLANP 1034
            EQV A K +VD +H  G     Q+ H GR   +  + + P+  A    +DKP+                   LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S   +Y   G    + +    A+ +   G+    +    +  V       + +    +  +G  +  G        E   + +   RADL++ GR  L NP
Sbjct:   79 EQVPALKKLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIAFDEKSDKPV------------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSA-TDYAHGGLQLEDHIP--FAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIVGRELLRNP 313          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_CLOAB (NADPH dehydrogenase OS=Clostridium acetobutylicum GN=namA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.114e-16
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = -1
Query:  615 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 836
            P+ LT +EI +I+  F+ AA+ A +AGFD IE+HGAHG+LI+QF+    N R D+YGGS ENR RF  E++EAV
Sbjct:  129 PKELTKNEIKEIILAFKAAAKRAEKAGFDAIEIHGAHGYLINQFLSPLSNFRDDEYGGSTENRTRFLKEVLEAV 202          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACCN (NADPH dehydrogenase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=namA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.454e-16
Identity = 80/288 (27.78%), Postives = 124/288 (43.06%), Query Frame = -1
Query:  234 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALG----LYMAESLNKYG----------ILYCHM-VEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRR------FEFNGPLNKYNR 1034
            E +E  +  V  +         Q+ H GR +     P   + I   DK   P                 ++ ++I   +  F+ AA  + +AGFD IELHGAHG+LI++F+    N RTD+YGG+ ENR RF  EI+ AV  E+    + +R+S       + D +PE L     +  A+ + + G          ++  H+ V P  +    K    H+ +    A     L+  G   E   + +    ADL+  GR  L NP  PR       FE   P ++Y+R
Sbjct:   80 EHIEGLQKTVSFIKEHDSKAAIQLAHAGRKAELHTDPVAPSAIPFNDKMKVPVA---------------MSKEQIQDTITAFQKAAIRSKQAGFDVIELHGAHGYLINEFLSPLSNKRTDEYGGTAENRYRFLREIIHAV-KEVWEGPLFVRIS-------ADDYHPEGLTVNDYVQFAKWMKEQGVDLIDCSSGAVVPAHIDVYPGYQVKYAKHLKEHAQI----ATGAVGLITSGVQAE---QILVNSEADLIFVGRELLRNPYFPRTAANELGFELKDP-HQYSR 336          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACC4 (NADPH dehydrogenase OS=Bacillus cereus (strain B4264) GN=namA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.899e-16
Identity = 73/257 (28.40%), Postives = 111/257 (43.19%), Query Frame = -1
Query:  273 VHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY--------------GILYCHM-VEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 998
            +H  G     Q+ H GR +  D      + I   DK   P                 +   +I + +  F+ AA  + +AGFD IELHGAHG+LI++F+    N RTD+YGGS ENR RF  EI+++V NE+    + +R+S       + D +P+ L +       K+               ++  H+ V P  +    K    H+ +    A     L+  G   E   + +    ADL+  GR  L NP  PR
Sbjct:   92 IHDNGAKAAIQLAHAGRKAELDTNAFAPSAIPFNDKMKIPV---------------EMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLINEFLSPLTNKRTDKYGGSPENRYRFLREIIDSV-NEVWDGPIFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGIDLIDCSSGAVVPAHIDVYPGYQVQYAKHIKEHTKI----ATGAVGLITTGSQAE---QILNNNEADLIFIGRELLRNPYFPR 318          
The following BLAST results are available for this feature:
BLAST of CV998068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NAMA_GEOSW4.089e-1930.68NADPH dehydrogenase OS=Geobacillus sp. (strain WCH... [more]
NAMA_BACHD6.975e-1930.35NADPH dehydrogenase OS=Bacillus halodurans GN=namA... [more]
NAMA_BACP23.462e-1830.22NADPH dehydrogenase OS=Bacillus pumilus (strain SA... [more]
NAMA_GEOKA4.521e-1829.17NADPH dehydrogenase OS=Geobacillus kaustophilus GN... [more]
NAMA_BACA27.712e-1834.97NADPH dehydrogenase OS=Bacillus amyloliquefaciens ... [more]
NAMA_LISMF1.114e-1628.40NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]
NAMA_LISMC1.114e-1628.40NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]
NAMA_CLOAB1.114e-1655.41NADPH dehydrogenase OS=Clostridium acetobutylicum ... [more]
NAMA_BACCN1.454e-1627.78NADPH dehydrogenase OS=Bacillus cereus subsp. cyto... [more]
NAMA_BACC41.899e-1628.40NADPH dehydrogenase OS=Bacillus cereus (strain B42... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_B-6_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC60_D08_058, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998068 ID=CV998068; Name=CV998068; organism=Citrus sinensis; type=EST; length=1034bp
TTTTTTGATGTGAACATAGGCATAGCCTTGGCCTTACGCCATTACAATTT
TACTGAGATAAACTATACTGGCTTTTACATTCACACGCTACATCAATAAA
AATTCAGAAAACAAGATTAAATCTGAGAGAATGCTTTATCAATCTAATGC
TTTTTCTTGGTAACATAAGAAGAGGTGTCGAGAAAGGGATAATCCGTGTA
ACCAACAACAGGATCGGAAACATAGAATGTTTCTCTGTTGTACTTATTGA
GGGGGCCATTGAACTCAAATCTCCTGGGTAAATCTGGATTAGCCAAGAAC
AAGCGACCATAAACAACAAGATCTGCACGGCCTTCAGCAATAGCTTTGTT
TCCATCTTCCCTGTCATAACCCCCAGCGACAAGAAAAGTACCCTTGAAAG
CCTTTCTCATGGGCAGCAAACTGTGAGGACATTCAGATTTTTCTCCAACT
GTTTTCATCCTCGGCTCAACCATGTGACAATAGAGGATACCGTATTTGTT
CAAGGATTCTGCCATGTAAAGACCTAAAGCTTCTGGGTTAGAGTCCCCTG
ATTCCATATAGTTTGCAAACGGAGATAGTCTTATCCCAACCCTATCTGCC
CCTATTTCATTGGAAACAGCTTCAACTATTTCTAAAGCAAAACGGCAACG
GTTCTCTAAGGATCCTCCATACTGGTCTGTTCGATCATTCACTTGATCCT
TCATAAATTGGTCAATTAGGAAGCCATGTGCACCGTGGAGCTCAATGCCA
TCGAAACCAGCCTCAATTGCATTTCTTGCAGCAAGCCTGAAATCATTCAC
AATTTGAGGGATTTCATCTGTCGTTAGCCGCCTTGGAGGAGTGAATTGTG
CAATATCAACACCATTAGTGCGGATTTGAGGTGTCAATGGCTTGTCTGTA
CAGGAAATTGGAGCTTGACCATTTGGCTGAATATCTTGATTTGAAACCCT
GCCAACGTGCCCAATCTGACAAAAGAAGATCCCACCTTTGGCATGAACAG
CATCTACAATCGGTTTCCATGCTTCAACTTGCTC
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