CV998068

Overview
NameCV998068
Unique NameCV998068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1034
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6985 contig Csv1_Contig6985:511..1544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACCR (NADPH dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=namA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.481e-16
Identity = 73/257 (28.40%), Postives = 111/257 (43.19%), Query Frame = -1
Query:  273 VHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY--------------GILYCHM-VEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 998
            +H  G     Q+ H GR +  D      + I   DK   P                 +   +I + +  F+ AA  + +AGFD IELHGAHG+LI++F+    N RTD+YGGS ENR RF  EI+++V NE+    + +R+S       + D +P+ L +       K+               ++  H+ V P  +    K    H+ +    A     L+  G   E   + +    ADL+  GR  L NP  PR
Sbjct:   92 IHDNGAKAAIQLAHAGRKAELDTNAFAPSAIPFNDKMKIPV---------------EMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLINEFLSPLTNKRTDKYGGSPENRYRFLREIIDSV-NEVWDGPIFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGIDLIDCSSGAVVPAHIDVYPGYQVQYAKHIKEHTNI----ATGAVGLITTGSQAE---QILNNNEADLIFIGRELLRNPYFPR 318          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_LISW6 (NADPH dehydrogenase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=namA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.527e-16
Identity = 75/268 (27.99%), Postives = 116/268 (43.28%), Query Frame = -1
Query:  285 EQVEAWKPIVDAVHAKGGIFFCQIGHVGR---VSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS---------------PFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 1034
            EQV A K +VD +H+ G     Q+ H GR   +  + + P+  A    + KP+                   LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S               PFA +M++     E + +     +N    ++     P    +   +     +L          L+  G   E   + +   RADL++ GR  L NP
Sbjct:   79 EQVPALKHLVDGLHSHGAKAGIQLAHAGRKAVLPGEIVAPSAIAYDEKSAKPV------------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSATDYAHGGLQLEDYIPFAKWMKA--DGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGVLG---------LITRG---EQAEEILCNERADLIIIGRELLRNP 313          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACSU (NADPH dehydrogenase OS=Bacillus subtilis GN=namA PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 5.527e-16
Identity = 68/258 (26.36%), Postives = 118/258 (45.74%), Query Frame = -1
Query:  273 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDR-EDGNKA---IAEGRADLVVYGRLFLANPDLPR 1034
            E +E +  + + V  +G     Q+ H GR +  +      + I+  ++  TP                 ++ +++ + V +F+ AA  A EAGFD IE+H AHG+LI +F+    N RTD+YGGS ENR RF  EI++ V  ++    + +R+S  ++Y + G    + +G   A+ + + G+         +          + +    K  +   +  G      DG+ A   +  GRADL+  GR  L +P   R
Sbjct:   80 EHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPV---------------EMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEV-KQVWDGPLFVRVSA-SDYTDKGLDIADHIG--FAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFAR 318          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_LISMO (NADPH dehydrogenase OS=Listeria monocytogenes GN=namA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.218e-16
Identity = 72/257 (28.02%), Postives = 113/257 (43.97%), Query Frame = -1
Query:  285 EQVEAWKPIVDAVHAKGGIFFCQIGHVGR---VSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYD----REDGNKAIAEGRADLVVYGRLFLANP 1034
            EQV A K +V  +H  G     Q+ H GR   +  + + P+  A    +DKP+                   LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S   +Y   G    + +    A+ +   G+    +    +  V       + +    +  +G  +  G        E   + +   RADL++ GR  L NP
Sbjct:   79 EQVPALKKLVGGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIAFDEKSDKPV------------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSA-TDYAHGGLQLEDHIP--FAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIVGRELLRNP 313          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_LISIN (NADPH dehydrogenase OS=Listeria innocua GN=namA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.608e-15
Identity = 74/255 (29.02%), Postives = 111/255 (43.53%), Query Frame = -1
Query:  285 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAF-KGTFLVAGGYD----REDGNKAIAEGRADLVVYGRLFLANP 1034
            EQV A K +VD +H  G     Q+ H GR +    +    + I   +K   P                 LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S   +Y   G    + +    A+ +   G+    +    +  V E    P   +P      +G  +  G        E   + +   RADL++ GR  L NP
Sbjct:   79 EQVPALKRLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIPFDEKSAKPV---------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPISNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSA-TDYAHGGLQLEDHIP--FAKWMKADGVELIDVSTGGLVNV-EPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIIGRELLRNP 313          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_LISMH (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=namA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.100e-15
Identity = 71/254 (27.95%), Postives = 110/254 (43.31%), Query Frame = -1
Query:  285 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYD----REDGNKAIAEGRADLVVYGRLFLANP 1034
            EQV A K +VD +H  G     Q+ H GR +    +    + I   +K   P                 LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S   +Y   G    + +    A+ +   G+    +    +  V       + +    +  +G  +  G        E   + +   RADL++ GR  L NP
Sbjct:   79 EQVPALKRLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIPFDEKSAKPV---------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSA-TDYAHGGLQLEDHIP--FAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIVGRELLRNP 313          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_GEOTN (NADPH dehydrogenase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=namA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.100e-15
Identity = 75/264 (28.41%), Postives = 118/264 (44.70%), Query Frame = -1
Query:  276 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLY----MAESLNKYGI----LYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGT---FLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLP 1034
            + +     +V  V   G     Q+ H GR S  ++     AP +      +P              P+ +T  +I + V  F+  AR A +AGFD IE+H AHG+LI++F+    N R D+YGGS ENR  F  E+++AV  E+    + +R+S       + D +P+ L +       + + + G+    +    V P    V    + P +    R+A   T    L+  G+  E+    +  GRADLV  GR  L NP  P
Sbjct:   80 DHIHGLHELVGLVKEHGAAIGIQLAHAGRKS--EVPGEIIAPSAIPFNESSPT-------------PKEMTKADIEKTVQAFQDGARRAKKAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYHFLGEVIDAV-REVWDGPLFVRIS-------ASDYHPDGLTVKDYVPYVKRMKEQGVDLVDVSSGAVVPARIDVYPGYQVPFAEFIRREAGIPTGAVGLITSGWQAEE---VLHNGRADLVFLGRELLRNPYWP 317          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACC2 (NADPH dehydrogenase OS=Bacillus cereus (strain G9842) GN=namA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.100e-15
Identity = 73/253 (28.85%), Postives = 117/253 (46.25%), Query Frame = -1
Query:  273 VHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTV--GEKSECPHSLLPMRKAFKGTF-LVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 998
            +H  G     Q+ H GR +  ++  N  AP +    P +  ++           P  +   +I + +  F+ AA  + +AGFD IELHGAHG+LI++F+    N RTD+YGGS ENR RF  EI+++V N++    + +R+S       + D +P+ L +       K+       ++ C    V P    V  G + +    +    K   G   L+  G   E   + + +  ADL+  GR  L NP  PR
Sbjct:   92 IHDNGAKAAIQLAHAGRKA--ELGTNAFAPSAI---PFSDTMKI----------PVEMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLINEFLSPLTNKRTDEYGGSPENRYRFLREIIDSV-NKVWDGPIFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGIDLIDCSSGAVVPAHIDVYPGYQVQYAKHIKEYTKIATGAVGLITTGSQAE---QILNDNEADLIFIGRELLRNPYFPR 318          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACC0 (NADPH dehydrogenase OS=Bacillus cereus (strain AH820) GN=namA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.582e-15
Identity = 70/250 (28.00%), Postives = 113/250 (45.20%), Query Frame = -1
Query:  273 VHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 998
            +H  G     Q+ H GR +  +++ +  AP +    P    ++T          P  ++  +I   V  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS ENR RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:   92 IHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKT----------PVEMSKHQIKDTVLAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILTNNEADLIFIGRELLRNPYFPR 318          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: STCD_RHIME (Probable N-methylproline demethylase OS=Rhizobium meliloti GN=stcD PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.678e-15
Identity = 72/270 (26.67%), Postives = 129/270 (47.78%), Query Frame = -1
Query:  270 EQVEAW-KPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRV-GIRLSPFANYMESGDSNPEALGLYMAESLNKYGIL-YCHMVEPRMKT---------VGEKSECPHSLL--PMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRR 1034
            +++  W + + DAVH +G +   Q+ H+GR +  D       P+            ++  + A    P+++   +I +I+ DF  AA      G DG+EL  A+G LIDQF     N+    YGGSL+NR RF  ++++A+   +G + + G+R +  A+    G ++ +A GL +++ L + G++ Y +++   + T         +   +  PH      +R A    TF  A   D      AIA G+ D+V   R  + +P + R+
Sbjct:   79 DEIVPWIREMTDAVHEEGAVIMIQLTHLGRRTRWD--KGDWLPVVAP---------SHHREAAHRAFPKKIEDWDIDRIIKDFADAAERMKAGGMDGVELE-AYGHLIDQFASPLTNELDGPYGGSLDNRMRFCFDVLKAIRARVGDEFILGVRYT--ADECLPGGTD-KAEGLEISKRLKESGLIDYLNIIRGHIDTDPGLTDVIPIQGMANSPHLDFAGEIRAATNFPTFHAAKIPDVATARHAIASGKVDMVGMTRAHMTDPHIVRK 333          
The following BLAST results are available for this feature:
BLAST of CV998068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NAMA_BACCR2.481e-1628.40NADPH dehydrogenase OS=Bacillus cereus (strain ATC... [more]
NAMA_LISW65.527e-1627.99NADPH dehydrogenase OS=Listeria welshimeri serovar... [more]
NAMA_BACSU5.527e-1626.36NADPH dehydrogenase OS=Bacillus subtilis GN=namA P... [more]
NAMA_LISMO7.218e-1628.02NADPH dehydrogenase OS=Listeria monocytogenes GN=n... [more]
NAMA_LISIN1.608e-1529.02NADPH dehydrogenase OS=Listeria innocua GN=namA PE... [more]
NAMA_LISMH2.100e-1527.95NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]
NAMA_GEOTN2.100e-1528.41NADPH dehydrogenase OS=Geobacillus thermodenitrifi... [more]
NAMA_BACC22.100e-1528.85NADPH dehydrogenase OS=Bacillus cereus (strain G98... [more]
NAMA_BACC03.582e-1528.00NADPH dehydrogenase OS=Bacillus cereus (strain AH8... [more]
STCD_RHIME4.678e-1526.67Probable N-methylproline demethylase OS=Rhizobium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_B-6_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC60_D08_058, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998068 ID=CV998068; Name=CV998068; organism=Citrus sinensis; type=EST; length=1034bp
TTTTTTGATGTGAACATAGGCATAGCCTTGGCCTTACGCCATTACAATTT
TACTGAGATAAACTATACTGGCTTTTACATTCACACGCTACATCAATAAA
AATTCAGAAAACAAGATTAAATCTGAGAGAATGCTTTATCAATCTAATGC
TTTTTCTTGGTAACATAAGAAGAGGTGTCGAGAAAGGGATAATCCGTGTA
ACCAACAACAGGATCGGAAACATAGAATGTTTCTCTGTTGTACTTATTGA
GGGGGCCATTGAACTCAAATCTCCTGGGTAAATCTGGATTAGCCAAGAAC
AAGCGACCATAAACAACAAGATCTGCACGGCCTTCAGCAATAGCTTTGTT
TCCATCTTCCCTGTCATAACCCCCAGCGACAAGAAAAGTACCCTTGAAAG
CCTTTCTCATGGGCAGCAAACTGTGAGGACATTCAGATTTTTCTCCAACT
GTTTTCATCCTCGGCTCAACCATGTGACAATAGAGGATACCGTATTTGTT
CAAGGATTCTGCCATGTAAAGACCTAAAGCTTCTGGGTTAGAGTCCCCTG
ATTCCATATAGTTTGCAAACGGAGATAGTCTTATCCCAACCCTATCTGCC
CCTATTTCATTGGAAACAGCTTCAACTATTTCTAAAGCAAAACGGCAACG
GTTCTCTAAGGATCCTCCATACTGGTCTGTTCGATCATTCACTTGATCCT
TCATAAATTGGTCAATTAGGAAGCCATGTGCACCGTGGAGCTCAATGCCA
TCGAAACCAGCCTCAATTGCATTTCTTGCAGCAAGCCTGAAATCATTCAC
AATTTGAGGGATTTCATCTGTCGTTAGCCGCCTTGGAGGAGTGAATTGTG
CAATATCAACACCATTAGTGCGGATTTGAGGTGTCAATGGCTTGTCTGTA
CAGGAAATTGGAGCTTGACCATTTGGCTGAATATCTTGATTTGAAACCCT
GCCAACGTGCCCAATCTGACAAAAGAAGATCCCACCTTTGGCATGAACAG
CATCTACAATCGGTTTCCATGCTTCAACTTGCTC
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