CV998068

Overview
NameCV998068
Unique NameCV998068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1034
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6985 contig Csv1_Contig6985:511..1544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACC3 (NADPH dehydrogenase OS=Bacillus cereus (strain 03BB102) GN=namA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.823e-14
Identity = 67/250 (26.80%), Postives = 111/250 (44.40%), Query Frame = -1
Query:  273 VHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 998
            +H  G     Q+ H GR +  +++ +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:   92 IHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKI----------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILTNNEADLIFIGRELLRNPYFPR 318          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACAH (NADPH dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=namA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.823e-14
Identity = 67/250 (26.80%), Postives = 111/250 (44.40%), Query Frame = -1
Query:  273 VHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 998
            +H  G     Q+ H GR +  +++ +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:   92 IHDNGAKAAIQLAHAGRKA--ELETDALAPSAV---PFNETMKI----------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILTNNEADLIFIGRELLRNPYFPR 318          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: NAMA_BACHK (NADPH dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=namA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.152e-13
Identity = 67/250 (26.80%), Postives = 111/250 (44.40%), Query Frame = -1
Query:  273 VHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 998
            +H  G     Q+ H GR +  +++ +  AP +    P    ++           P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:   92 IHDNGAKAAIQLAHAGRKA--ELETDALAPSAI---PFNETMKI----------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYIQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILTNNEADLIFIGRELLRNPYFPR 318          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: BAIH_EUBSP (NADH-dependent flavin oxidoreductase OS=Eubacterium sp. (strain VPI 12708) GN=baiH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.152e-13
Identity = 80/273 (29.30%), Postives = 115/273 (42.12%), Query Frame = -1
Query:  270 EQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDIQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLID-QFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKG----------------TFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRR 1034
            E V  +K   D V   G     QI H G  S       G   I+    PL P   TN    A     R ++ DEI  I+  F  AAR A EAG   I LH AH +++   F+    N R D+YGGSL+NR RF +E++E     +  D  + +R+S     M  G+S  +   LY+A      G+    M+E    + G + E    ++P +   +G                 + V    D     + +  G  D V  GR  LA+PDL ++
Sbjct:   82 ELVPQFKEFADRVKEAGSTLVPQIIHPGPES-----VCGYRHIA----PLGPSANTN----ANCHVSRSISIDEIHDIIKQFGQAARRAEEAGCGAISLHCAHAYMLPGSFLSPLRNKRMDEYGGSLDNRARFVIEMIEEARRNVSPDFPIFLRISG-DERMVGGNSLEDM--LYLAPKFEAAGV---SMLE---VSGGTQYEGLEHIIPCQNKSRGVNVYEASEIKKVVGIPVYAVGKINDIRYAAEIVERGLVDGVAMGRPLLADPDLCKK 332          
BLAST of CV998068 vs. ExPASy Swiss-Prot
Match: DHTM_METME (Trimethylamine dehydrogenase OS=Methylophilus methylotrophus GN=tmd PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 7.469e-13
Identity = 61/207 (29.47%), Postives = 96/207 (46.38%), Query Frame = -1
Query:  264 RRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMR---------------KAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 833
            + +   +I Q+   +  AA+ + +AGFD + ++GAH +L  QF+    N RTD+YGGSLENR RF LE +E V + +G+D  +  R      Y   G    E  G    E  +        +V+    T+G+ +E      P R               +  K   L  G Y D E   + + +G AD++   R  +A+P LP++ E
Sbjct:  138 KEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVY-GPGQIEAEVDGQKFVEMADS-------LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE 336          
The following BLAST results are available for this feature:
BLAST of CV998068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NAMA_BACC38.823e-1426.80NADPH dehydrogenase OS=Bacillus cereus (strain 03B... [more]
NAMA_BACAH8.823e-1426.80NADPH dehydrogenase OS=Bacillus thuringiensis (str... [more]
NAMA_BACHK1.152e-1326.80NADPH dehydrogenase OS=Bacillus thuringiensis subs... [more]
BAIH_EUBSP1.152e-1329.30NADH-dependent flavin oxidoreductase OS=Eubacteriu... [more]
DHTM_METME7.469e-1329.47Trimethylamine dehydrogenase OS=Methylophilus meth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_B-6_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC60_D08_058, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998068 ID=CV998068; Name=CV998068; organism=Citrus sinensis; type=EST; length=1034bp
TTTTTTGATGTGAACATAGGCATAGCCTTGGCCTTACGCCATTACAATTT
TACTGAGATAAACTATACTGGCTTTTACATTCACACGCTACATCAATAAA
AATTCAGAAAACAAGATTAAATCTGAGAGAATGCTTTATCAATCTAATGC
TTTTTCTTGGTAACATAAGAAGAGGTGTCGAGAAAGGGATAATCCGTGTA
ACCAACAACAGGATCGGAAACATAGAATGTTTCTCTGTTGTACTTATTGA
GGGGGCCATTGAACTCAAATCTCCTGGGTAAATCTGGATTAGCCAAGAAC
AAGCGACCATAAACAACAAGATCTGCACGGCCTTCAGCAATAGCTTTGTT
TCCATCTTCCCTGTCATAACCCCCAGCGACAAGAAAAGTACCCTTGAAAG
CCTTTCTCATGGGCAGCAAACTGTGAGGACATTCAGATTTTTCTCCAACT
GTTTTCATCCTCGGCTCAACCATGTGACAATAGAGGATACCGTATTTGTT
CAAGGATTCTGCCATGTAAAGACCTAAAGCTTCTGGGTTAGAGTCCCCTG
ATTCCATATAGTTTGCAAACGGAGATAGTCTTATCCCAACCCTATCTGCC
CCTATTTCATTGGAAACAGCTTCAACTATTTCTAAAGCAAAACGGCAACG
GTTCTCTAAGGATCCTCCATACTGGTCTGTTCGATCATTCACTTGATCCT
TCATAAATTGGTCAATTAGGAAGCCATGTGCACCGTGGAGCTCAATGCCA
TCGAAACCAGCCTCAATTGCATTTCTTGCAGCAAGCCTGAAATCATTCAC
AATTTGAGGGATTTCATCTGTCGTTAGCCGCCTTGGAGGAGTGAATTGTG
CAATATCAACACCATTAGTGCGGATTTGAGGTGTCAATGGCTTGTCTGTA
CAGGAAATTGGAGCTTGACCATTTGGCTGAATATCTTGATTTGAAACCCT
GCCAACGTGCCCAATCTGACAAAAGAAGATCCCACCTTTGGCATGAACAG
CATCTACAATCGGTTTCCATGCTTCAACTTGCTC
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