CV998065

Overview
NameCV998065
Unique NameCV998065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:656..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.580e-19
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  261 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCG 431
            CH+VII  W+PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +CG
Sbjct:  245 CHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          

HSP 2 Score: 32.3426 bits (72), Expect = 6.580e-19
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            AIWFWMT Q PKPS
Sbjct:  231 AIWFWMTPQSPKPS 244          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.884e-18
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = -1
Query:  207 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 431
            CH+V++ E++P   DV A+R  G+GL TNI+NGG+EC +  ++ V NRIGF+  +C   G+  G NLDC +Q P+
Sbjct:  216 CHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          

HSP 2 Score: 26.9498 bits (58), Expect = 1.884e-18
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            A+WFWMT +  KPS
Sbjct:  202 ALWFWMTPRDTKPS 215          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.019e-15
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  183 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQS 428
            H V+  +W P+  D  A R PGYGLTTNI+ GG++C  G     A+R+ F+  +C   G+  G NLDC+ Q P+  ++M+ S
Sbjct:  258 HAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          

HSP 2 Score: 25.0238 bits (53), Expect = 1.019e-15
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = -3
Query:  421 AIWFWMTAQPPKPSLPRS 474
            A+W WMTA+ P    P +
Sbjct:  242 ALWLWMTARSPSQPSPHA 259          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.324e-15
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = -1
Query:  183 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQS 428
            H V+  +W P+  D  A R PGYGLTTNI+ GG++C  G     A+R+ F+  +C   G+  G NLDC+ Q P+   +M+ S
Sbjct:  258 HAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          

HSP 2 Score: 25.0238 bits (53), Expect = 1.324e-15
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = -3
Query:  421 AIWFWMTAQPPKPSLPRS 474
            A+W WMTA+ P    P +
Sbjct:  242 ALWLWMTARSPSQPSPHA 259          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = -1
Query:  198 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPN 431
            CHEVI  EW PS  D+ A R PG+G+ TNII  G EC K   +   NRI ++  +C    + PGDNL C NQ  +  N
Sbjct:  230 CHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDN 307          
The following BLAST results are available for this feature:
BLAST of CV998065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI4_SOLTU6.580e-1961.40Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI10_ORYSJ1.884e-1846.67Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ1.019e-1541.46Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.324e-1541.46Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR5.486e-1546.15Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_B-4_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC58_B08_062, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998065 ID=CV998065; Name=CV998065; organism=Citrus sinensis; type=EST; length=476bp
TTTTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCAGTCTTAT
TTAATTTACCTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCAC
CTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTA
TTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAAATT
AGGGCCATAAGGCCCTTGGTTGTAGCAATCAAGATTGTCGCCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTAGCTACA
AAGCTATTCCAACCTTTGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCTGGCGTTTACGTCATTTGCTGATG
GTTTCCATTCGTCGATAATGACTTCGTGGCAACGATGGCTTTGGTGGCTG
TGCAGTCATCCAGAACCAGATTGCCT
back to top