CV998064

Overview
NameCV998064
Unique NameCV998064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:623..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.771e-23
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   43 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 267
            CH V+  +W P+ ND  A R+PGYG+ TNIINGG+ECG G +S VA+RIGF+  +C   G+  G NLDCYNQ P+
Sbjct:  247 CHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          

HSP 2 Score: 29.261 bits (64), Expect = 1.771e-23
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:    6 WFWMTAQPPKPS 41
            WFWMT Q PKPS
Sbjct:  235 WFWMTPQSPKPS 246          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.457e-23
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   43 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 294
            CH+VII  W+PS+ D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +C   G+ PGDNLDC NQ  +G  L+  +M
Sbjct:  241 CHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.016e-23
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYG 270
            H+VII  W PSA D  A+R+PGYG+ TNIINGGIECG G N  V +RIG++  +CG   + PG+NLDCYNQ  +G
Sbjct:  177 HDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          

HSP 2 Score: 27.335 bits (59), Expect = 3.016e-23
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            IWFWMT Q  KPS
Sbjct:  163 IWFWMTPQDNKPS 175          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.918e-23
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 267
            H VI  +W PS  D  A R+PG+G+ TNIINGGIECG G +S VA+RIGF+  +C   G+  G+NLDCY+Q P+
Sbjct:  192 HAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          

HSP 2 Score: 35.8094 bits (81), Expect = 3.918e-23
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            IWFWMTAQPPKPS
Sbjct:  178 IWFWMTAQPPKPS 190          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.117e-22
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 267
            H+VI   W PS  D  A R PGYG+ TNI+NGG+ECG G +  VANRIGF+  +CG FGI  G NLDCYNQ P+
Sbjct:  256 HDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          

HSP 2 Score: 26.1794 bits (56), Expect = 1.117e-22
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            +WFWMT Q  KPS
Sbjct:  242 LWFWMTPQGNKPS 254          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.461e-22
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 267
            H VI  +W PS  D  A R PG+G+ TNIINGG+ECG G +S VA+RIGF+  +C   G+  GDNLDCYNQ P+
Sbjct:  192 HAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          

HSP 2 Score: 31.9574 bits (71), Expect = 1.461e-22
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            +WFWMTAQ PKPS
Sbjct:  178 LWFWMTAQAPKPS 190          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.477e-22
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   43 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQ 258
            CH+VI   W PSA D +A+R+PGYG+ TNIINGGIECGKG N+ V +RIG++        + PGDNLDCYNQ
Sbjct:  177 CHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQ 248          

HSP 2 Score: 26.9498 bits (58), Expect = 2.477e-22
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            IWFWMT Q  KPS
Sbjct:  164 IWFWMTPQGNKPS 176          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.478e-22
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQ 258
            H+VII  W PSA D +A+R PG G+ TNIINGGIECG G N+ V +RIG++  +CG   + PGDNLDCYNQ
Sbjct:  177 HDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQ 247          

HSP 2 Score: 27.335 bits (59), Expect = 2.478e-22
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            IWFWMT Q  KPS
Sbjct:  163 IWFWMTPQDNKPS 175          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.226e-22
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYG 270
            H+VI   W PS  D    R+PG+G+ TNIINGG+EC  G N+ + NRIGF+  +C   G+ PG+NLDC NQ P+G
Sbjct:  172 HDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          

HSP 2 Score: 31.9574 bits (71), Expect = 3.226e-22
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            +WFWMTAQ PKPS
Sbjct:  158 LWFWMTAQQPKPS 170          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 5.427e-22
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 267
            H VI  +W PS  D  A R+PG+G+ TNI+NGGIECG G +S VA+RIGF+  +C   G+  G+NLDCY+Q P+
Sbjct:  244 HAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          

HSP 2 Score: 31.5722 bits (70), Expect = 5.427e-22
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            +WFWMTAQ PKPS
Sbjct:  230 MWFWMTAQAPKPS 242          
The following BLAST results are available for this feature:
BLAST of CV998064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI1_ORYSJ1.771e-2356.00Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_TOBAC2.457e-2354.76Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIQ_TOBAC3.016e-2358.67Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI2_HORVU3.918e-2355.4126 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI2_ORYSJ1.117e-2259.46Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE1.461e-2256.76Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIT_PETHY2.477e-2259.72Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC2.478e-2260.56Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHID_SOLLC3.226e-2252.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI1_HORVU5.427e-2254.0526 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_B-4_T3 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC28_D04_026, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998064 ID=CV998064; Name=CV998064; organism=Citrus sinensis; type=EST; length=476bp
CAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTTGCCACGA
AGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCAGCC
GGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAA
TGTGGCAAAGGTTGGAATAGCTTTGTAGCTAACCGTATTGGGTTCTTTAC
CACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGCGACAATCTTGATTGCT
ACAACCAAGGGCCTTATGGCCCTAATTTGATGGCACAATCTATGTGATCA
TCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAA
AACTTTAGATGTCACACTTGTAGGTGGACAACTAAATTGTTAGTTTGTTA
CGCTCTTATTGTAGGTAAATTAAATAAGACTGATCCAACATGGATCAATG
AGTCTTCTCCAAAAAAAAAAAAAAAA
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