CV998064

Overview
NameCV998064
Unique NameCV998064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:623..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.882e-18
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   43 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCG 213
            CH+VII  W+PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +CG
Sbjct:  245 CHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          

HSP 2 Score: 30.8018 bits (68), Expect = 1.882e-18
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            IWFWMT Q PKPS
Sbjct:  232 IWFWMTPQSPKPS 244          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.385e-18
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   43 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 267
            CH+V++ E++P   DV A+R  G+GL TNI+NGG+EC +  ++ V NRIGF+  +C   G+  G NLDC +Q P+
Sbjct:  216 CHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          

HSP 2 Score: 25.409 bits (54), Expect = 5.385e-18
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:    3 IWFWMTAQPPKPS 41
            +WFWMT +  KPS
Sbjct:  203 LWFWMTPRDTKPS 215          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.906e-15
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQS 291
            H V+  +W P+  D  A R PGYGLTTNI+ GG++C  G     A+R+ F+  +C   G+  G NLDC+ Q P+  ++M+ S
Sbjct:  258 HAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          

HSP 2 Score: 23.483 bits (49), Expect = 2.906e-15
Identity = 7/17 (41.18%), Postives = 10/17 (58.82%), Query Frame = 3
Query:    3 IWFWMTAQPPKPSLPRS 53
            +W WMTA+ P    P +
Sbjct:  243 LWLWMTARSPSQPSPHA 259          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.776e-15
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   46 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQS 291
            H V+  +W P+  D  A R PGYGLTTNI+ GG++C  G     A+R+ F+  +C   G+  G NLDC+ Q P+   +M+ S
Sbjct:  258 HAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          

HSP 2 Score: 23.483 bits (49), Expect = 3.776e-15
Identity = 7/17 (41.18%), Postives = 10/17 (58.82%), Query Frame = 3
Query:    3 IWFWMTAQPPKPSLPRS 53
            +W WMTA+ P    P +
Sbjct:  243 LWLWMTARSPSQPSPHA 259          
BLAST of CV998064 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   43 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPN 276
            CHEVI  EW PS  D+ A R PG+G+ TNII  G EC K   +   NRI ++  +C    + PGDNL C NQ  +  N
Sbjct:  230 CHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDN 307          
The following BLAST results are available for this feature:
BLAST of CV998064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI4_SOLTU1.882e-1861.40Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI10_ORYSJ5.385e-1846.67Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ2.906e-1541.46Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.776e-1541.46Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR5.486e-1546.15Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_B-4_T3 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC28_D04_026, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998064 ID=CV998064; Name=CV998064; organism=Citrus sinensis; type=EST; length=476bp
CAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTTGCCACGA
AGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCAGCC
GGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAA
TGTGGCAAAGGTTGGAATAGCTTTGTAGCTAACCGTATTGGGTTCTTTAC
CACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGCGACAATCTTGATTGCT
ACAACCAAGGGCCTTATGGCCCTAATTTGATGGCACAATCTATGTGATCA
TCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAA
AACTTTAGATGTCACACTTGTAGGTGGACAACTAAATTGTTAGTTTGTTA
CGCTCTTATTGTAGGTAAATTAAATAAGACTGATCCAACATGGATCAATG
AGTCTTCTCCAAAAAAAAAAAAAAAA
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