CV998059

Overview
NameCV998059
Unique NameCV998059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:213..1180. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 1.057e-106
Identity = 191/265 (72.08%), Postives = 218/265 (82.26%), Query Frame = -1
Query:  174 GRNPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 968
            GRNPSLD GFKGAEIAMASY SELQFL NPVTNHVQSAEQHNQDVNSLGLISSRKT EA+DILKLMSSTFL+ALCQA+DLRH+EEN+K  VK+ V  VAKK L+  ++G+LH +RFCEKDLLK  DRE VFAY DDPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+  IP+RI ECRSYPLYRFVRE LG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  443 GRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTDEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 379.793 bits (974), Expect = 1.291e-104
Identity = 188/224 (83.93%), Postives = 203/224 (90.62%), Query Frame = -1
Query:  297 GRNPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLG 968
            GRNPSLD GFKG EIAMASY SELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKTAEAVDILKLMSST+LVALCQ+IDLRHLEEN+K TVKNTVSQVAKKVLT+G +GELHPSRFCEKDLL+  DRE+VFAY DDPC  TYPLMQKLRQVLV+HALNNGE EK AN+SIFQKIA FE+ELK +LPKEVE+ R   ENG+ +IPNRIK CRSYPLYRFVRE LG
Sbjct:  441 GRNPSLDSGFKGGEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQSIDLRHLEENMKSTVKNTVSQVAKKVLTMGVNGELHPSRFCEKDLLRVVDREYVFAYADDPCLTTYPLMQKLRQVLVDHALNNGETEKNANTSIFQKIATFEDELKAILPKEVESVRVAFENGTMSIPNRIKACRSYPLYRFVREELG 664          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PALY_MALDO (Phenylalanine ammonia-lyase (Fragment) OS=Malus domestica GN=PAL PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 2.203e-104
Identity = 184/228 (80.70%), Postives = 204/228 (89.47%), Query Frame = -1
Query:  171 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 854
            EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ+IDLRHLEENL++TVKNTVSQVAK+ LT G +GELHPSRFCEKDLLK  DRE+VFAYIDDPCSATYPLMQKLR+VL+EHAL NGE+EK A++SIFQKI AFEEELK +LPKEVE+AR  +E G+  +PNRI ECRSYPLY+FVRE LG  +LTGEKV SPGEE DKVF A+CQGKIIDP+L CL  WNGA
Sbjct:    3 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQSIDLRHLEENLRNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLREVLIEHALTNGESEKNASTSIFQKIGAFEEELKALLPKEVESARSAIEGGNAAVPNRIAECRSYPLYKFVREELGGEYLTGEKVRSPGEECDKVFQAICQGKIIDPILGCLEGWNGA 230          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 375.555 bits (963), Expect = 2.436e-103
Identity = 187/264 (70.83%), Postives = 220/264 (83.33%), Query Frame = -1
Query:  174 RNPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 965
            RNPSLD GFKG EIAMASY SELQ+LANP+TNHVQSAEQHNQDVNSLGL+S+RKT EAVDILKLM+ST++VALCQA+DLRHLEEN+K +VKN V+QVAKKVLT+  +G+L  +RF EK+LL A DRE VF+Y DDPCSA YPLMQKLR VLVEHAL +G+ E  A  S+F KI  FEEEL++ LP+E+E AR  V NG+  + NRI E RS+PLYRFVRE LG  FLTGEK+ SPGEE +KVF  + QGK+IDPML+CL+EWNG
Sbjct:  434 RNPSLDYGFKGTEIAMASYCSELQYLANPITNHVQSAEQHNQDVNSLGLVSARKTLEAVDILKLMTSTYIVALCQAVDLRHLEENIKSSVKNCVTQVAKKVLTMNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSANYPLMQKLRAVLVEHALTSGDAEPEA--SVFSKITKFEEELRSALPREIEAARVAVANGTAPVANRIVESRSFPLYRFVREELGCVFLTGEKLKSPGEECNKVFLGISQGKLIDPMLDCLKEWNG 695          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 4.593e-102
Identity = 183/265 (69.06%), Postives = 216/265 (81.51%), Query Frame = -1
Query:  174 GRNPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 968
            GRNPSLD GFK +E+AMA+Y SELQ+LANPVT+HVQS EQHNQDVNSLGLIS+ KT EA++ILKLMSST+LVALCQAIDLRHLEE  K+TVKNTVS+VA K LT     E +P RF E++LLK  DRE+VF+YIDDP +  YPLM KL+QVL E A  +  N+K  +  +F+KI AFE+ELK++LPKEVE+AR   ENG+P  PNRIKECRSYPLY+FVRE LG   LTGEK  SP EEF+KV+TAMCQ KIIDP+LECL +WNG
Sbjct:  441 GRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSTEQHNQDVNSLGLISALKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLTTEDKEETNPFRFSEEELLKVVDREYVFSYIDDPLNVRYPLMPKLKQVLYEQAHTSVINDKNVSLLVFEKIGAFEDELKSLLPKEVESARVAYENGNPATPNRIKECRSYPLYKFVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNG 705          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 2.441e-95
Identity = 170/265 (64.15%), Postives = 205/265 (77.36%), Query Frame = -1
Query:  174 GRNPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 968
            G NPSLD G KGAEIAMASY SEL +LANPVT+HVQSAEQHNQDVNSLGL+S+RK+AEA+DILKLM ST+L ALCQA+DLRHLEEN+  TVK  VSQVAKK L+ G +GEL P RFCEKDLL+  D EHVF+YIDDPC+A+YPL QKLR +LVEHA  N E EK  N+SIF KI  FE ELK  L  +V  AR++ + G+  +P+RI+ECRSYPLY FVR  LG+  L+G +  SPGE  + V+ A+ + K+I P+ +CL  W G
Sbjct:  449 GPNPSLDYGLKGAEIAMASYTSELLYLANPVTSHVQSAEQHNQDVNSLGLVSARKSAEAIDILKLMLSTYLTALCQAVDLRHLEENMLATVKQIVSQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNAEGEKDPNTSIFNKIPVFEAELKAQLEPQVSLARESYDKGTSPLPDRIQECRSYPLYEFVRNQLGTKLLSGTRTISPGEVIEVVYDAISEDKVIVPLFKCLDGWKG 713          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 328.176 bits (840), Expect = 4.459e-89
Identity = 174/266 (65.41%), Postives = 198/266 (74.44%), Query Frame = -1
Query:  171 GRNPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 968
            GRNPSLD G KGAE+AMASY SELQFLANPVTNHV+SA QHNQDVNSLGLISSR TAEAV ILKLMS+T+LVALCQA DLRHLEE LK  V   VS  AK VL +       P R    D+L   +RE+VF+Y+DDP S T PLMQKLR VL + AL   E E     ++F+KI AFE ELK +LPKEVE  R   ENG+  + NRIK+CRSYPLYRFVR  L +  LTGE V SPGE+FDKVF A+ QGK+IDP+ ECL+EWNGA
Sbjct:  434 GRNPSLDYGLKGAEVAMASYCSELQFLANPVTNHVESASQHNQDVNSLGLISSRTTAEAVVILKLMSTTYLVALCQAFDLRHLEEILKKAVNEVVSHTAKSVLAI------EPFR-KHDDILGVVNREYVFSYVDDPSSLTNPLMQKLRHVLFDKALAEPEGE---TDTVFRKIGAFEAELKFLLPKEVERVRTEYENGTFNVANRIKKCRSYPLYRFVRNELETRLLTGEDVRSPGEDFDKVFRAISQGKLIDPLFECLKEWNGA 689          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.464e-63
Identity = 119/138 (86.23%), Postives = 128/138 (92.75%), Query Frame = -1
Query:  555 GRNPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPC 968
            GRNPSLD GFKGAEIAMASY SELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKTAEAVDILKLMSST+LVALCQAIDLRHLEENLK  VKNTVSQVAK+ LT+G  GELHP+RFCEK+LL+  DRE++FAY DDPC
Sbjct:  453 GRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSVVKNTVSQVAKRTLTIGVLGELHPARFCEKELLRVVDREYLFAYADDPC 590          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.184e-19
Identity = 85/265 (32.08%), Postives = 123/265 (46.42%), Query Frame = -1
Query:  189 NPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADR-EHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEV-ENARQTVENGSPTIPNRIKECRSYPLYRFVREGLG-----SNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 962
            +PSL    KG +IA A+Y SEL  LANPVT HVQ AE  NQ VNSL LIS+R+T E+ D+L L+ +T L  + QAIDLR +E   K      +  +  +      +G        EK     A R E   +Y  D     +         +VE   +   +    N+    K+AA E  +   L ++V E         SP +       R+  LY FVRE LG      +   G++  + G    K++ A+  G+I + +L+ L
Sbjct:  460 DPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAEMANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFGSAMTGSNLRDELVEKVNKTLAKRLEQTNSY--DLVPRWHDAFSFAAGTVVEVLSSTSLSLAAVNA---WKVAAAESAIS--LTRQVRETFWSAASTSSPAL--SYLSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAIKSGRINNVLLKML 715          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PALY_AGABI (Phenylalanine ammonia-lyase (Fragment) OS=Agaricus bisporus GN=palA PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.849e-18
Identity = 42/82 (51.22%), Postives = 63/82 (76.83%), Query Frame = -1
Query:  717 NPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 962
            +PSL+   KG +IA A+Y +EL +LA+PV+ H+QSAE HNQ VNS+ L+S+R T  ++D+L ++ +T+L  LCQA+DLR L+
Sbjct:   58 DPSLNYHVKGVDIATAAYAAELGYLASPVSTHIQSAEMHNQAVNSMALVSARATINSIDVLSMLVATYLYNLCQALDLRALQ 139          
The following BLAST results are available for this feature:
BLAST of CV998059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PAL2_ORYSJ1.057e-10672.08Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_HELAN1.291e-10483.93Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PALY_MALDO2.203e-10480.70Phenylalanine ammonia-lyase (Fragment) OS=Malus do... [more]
PAL1_ORYSJ2.436e-10370.83Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL3_PHAVU4.593e-10269.06Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PALY_PINTA2.441e-9564.15Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PAL3_ARATH4.459e-8965.41Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL2_SOLTU2.464e-6386.23Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]
PALY_RHOTO2.184e-1932.08Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_AGABI1.849e-1851.22Phenylalanine ammonia-lyase (Fragment) OS=Agaricus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_B-1_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC55_G07_051, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998059 ID=CV998059; Name=CV998059; organism=Citrus sinensis; type=EST; length=968bp
AGGAAATAAGTCTTATAACCTTAAATGAAAAAACCAATAGAAGTGATTGA
AATATTACAGATGGATTTGTACCACTGACTCGCATGGGCAAATTCTATGA
ACACAAGAACACAAGGGATTGAAGACCATGTTATTAAACAAAATAAAAAC
AACTAACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACATTCCAG
CATTGGATCAATGATCTTGCCCTGGCACATTGCTGTAAAAACTTTGTCAA
ATTCCTCGCCGGGCGATGTAACTTTTTCCCCTGTTAGAAAATTAGACCCG
AGCCCCTCCCTCACGAACCTGTACAACGGGTAAGACCTGCATTCTTTGAT
CCTGTTGGGAATTGTTGGACTTCCATTCTCAACAGTCTGCCTGGCATTCT
CAACTTCTTTCGGCAAAACGGTTTTCAATTCCTCCTCAAAGGCTGCAATC
TTCTGGAAGATTGAAGAGTTGGCAGTCTTCTCGTTCTCTCCATTGTTCAG
TGCGTGCTCAACAAGTACTTGCCTTAGCTTTTGCATCAATGGATAGGTAG
CACTGCAGGGGTCATCAATGTATGCAAAGACGTGTTCGCGATCAGCCGCT
TTGAGCAGATCCTTCTCACAGAATCTTGATGGATGAAGCTCTCCACTAGC
ACCGACGGTTAAGACTTTCTTAGCTACTTGGCTGACAGTATTCTTGACTG
TATGCTTCAAATTTTCCTCCAAATGTCTCAAATCAATAGCCTGGCAAAGC
GCTACCAAGAATGTGGAAGACATGAGCTTCAGGATGTCGACTGCTTCAGC
AGTCTTCCTGGAAGAGATCAATCCCAAGGAGTTTACATCTTGGTTGTGCT
GTTCAGCACTTTGGACGTGGTTAGTAACAGGATTGGCAAGAAATTGGAGC
TCCGAAACATAGGAAGCCATAGCAATTTCAGCGCCCTTGAAACCCATATC
CAGGCTAGGATTCCTGCC
back to top