CV998059

Overview
NameCV998059
Unique NameCV998059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:213..1180. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.379e-18
Identity = 78/268 (29.10%), Postives = 133/268 (49.63%), Query Frame = -1
Query:  189 NPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVF----AYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTV-ENGSPTIPNRIKECRSYPLYRFVREGLG-----SNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 962
            +PSL    KG +IA A+Y SEL  LANPV+ HVQ AE  NQ +NSL LIS+R+TAEA D+L L+ +T L  + QA+DLR +E       +  V+++ K+     A+ E+       K + K   + + +     + D    AT  +++ L           G+    A+ + + K+A  E+ +   L + V ++      + SP +  +    R+  LY FVRE +G      +   G++  + G    +++ A+  G I   +++ +
Sbjct:  462 DPSLSYHCKGLDIAAAAYTSELGHLANPVSTHVQPAEMGNQAINSLALISARRTAEANDVLSLLLATHLYCVLQAVDLRAMEFEHTKAFEPMVTELLKQHFGALATAEVEDK--VRKSIYKRLQQNNSYDLEQRWHDTFSVATGAVVEALA----------GQEVSLASLNAW-KVACAEKAI--ALTRSVRDSFWAAPSSSSPAL--KYLSPRTRVLYSFVREEVGVKARRGDVYLGKQEVTIGTNVSRIYEAIKSGCIAPVLVKMM 712          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PALY_USTMA (Phenylalanine ammonia-lyase OS=Ustilago maydis GN=PAL1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.575e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = -1
Query:  717 PSLDMGF--KGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 959
            P L + F  KG +IA+AS  SEL FL NPV+ HVQSAE  NQ +NSL LIS R+T +A++ L ++ +  L  LCQA+D+R L+
Sbjct:  458 PDLSLNFHAKGIDIALASVTSELMFLGNPVSTHVQSAEMANQAINSLALISGRQTLQAIECLSMIQAWSLYLLCQALDIRALQ 540          
BLAST of CV998059 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.620e-14
Identity = 71/268 (26.49%), Postives = 126/268 (47.01%), Query Frame = -1
Query:  213 NPSLDMGFKGAEIAMASYVSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEK--DLLKAADREHVFAYID-DPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKT---VLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLG---------SNFLTG---EKVTSPGEEFDKVFTAMCQGKI 962
            +PSL+   KG +IA A+YV+E    A P   H+QSAE HNQ VNSL LIS+R T  ++++L  + +++L  LCQA+DLR L+      +   + +  +      + G    S   EK    L +A  +H+      D       +      VL++   ++G +   ++  +   +++F+  + T   VL  ++       + G       I + R  P+Y+F+R  +G         + F  G   E VT  G+   +++ ++  GK+
Sbjct:  476 DPSLNYHAKGLDIATAAYVAE----ATPGPTHIQSAEMHNQAVNSLALISARATITSLEVLTSLIASYLYILCQALDLRALQREFLPGLDIIIREELR-----SSFGSFLSSEQMEKLQQNLTSAFEDHLDKTTTMDNTDRMTTMAATSSSVLLQFFTDSGASVPPSSCDLLSSVSSFQSSVATRSSVLMDDLRKEYIFGDRGPTPASQYIGKTR--PVYQFIRTTIGVRKHGSENYNKFYNGLGVEDVTI-GQNISRIYESIRDGKM 731          
The following BLAST results are available for this feature:
BLAST of CV998059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PALY_RHORB5.379e-1829.10Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_USTMA6.575e-1651.81Phenylalanine ammonia-lyase OS=Ustilago maydis GN=... [more]
PALY_AMAMU1.620e-1426.49Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_B-1_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC55_G07_051, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998059 ID=CV998059; Name=CV998059; organism=Citrus sinensis; type=EST; length=968bp
AGGAAATAAGTCTTATAACCTTAAATGAAAAAACCAATAGAAGTGATTGA
AATATTACAGATGGATTTGTACCACTGACTCGCATGGGCAAATTCTATGA
ACACAAGAACACAAGGGATTGAAGACCATGTTATTAAACAAAATAAAAAC
AACTAACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACATTCCAG
CATTGGATCAATGATCTTGCCCTGGCACATTGCTGTAAAAACTTTGTCAA
ATTCCTCGCCGGGCGATGTAACTTTTTCCCCTGTTAGAAAATTAGACCCG
AGCCCCTCCCTCACGAACCTGTACAACGGGTAAGACCTGCATTCTTTGAT
CCTGTTGGGAATTGTTGGACTTCCATTCTCAACAGTCTGCCTGGCATTCT
CAACTTCTTTCGGCAAAACGGTTTTCAATTCCTCCTCAAAGGCTGCAATC
TTCTGGAAGATTGAAGAGTTGGCAGTCTTCTCGTTCTCTCCATTGTTCAG
TGCGTGCTCAACAAGTACTTGCCTTAGCTTTTGCATCAATGGATAGGTAG
CACTGCAGGGGTCATCAATGTATGCAAAGACGTGTTCGCGATCAGCCGCT
TTGAGCAGATCCTTCTCACAGAATCTTGATGGATGAAGCTCTCCACTAGC
ACCGACGGTTAAGACTTTCTTAGCTACTTGGCTGACAGTATTCTTGACTG
TATGCTTCAAATTTTCCTCCAAATGTCTCAAATCAATAGCCTGGCAAAGC
GCTACCAAGAATGTGGAAGACATGAGCTTCAGGATGTCGACTGCTTCAGC
AGTCTTCCTGGAAGAGATCAATCCCAAGGAGTTTACATCTTGGTTGTGCT
GTTCAGCACTTTGGACGTGGTTAGTAACAGGATTGGCAAGAAATTGGAGC
TCCGAAACATAGGAAGCCATAGCAATTTCAGCGCCCTTGAAACCCATATC
CAGGCTAGGATTCCTGCC
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