EH668992

Overview
NameEH668992
Unique NameEH668992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length139
Libraries
Library NameType
Citrus apomitic embryos (subtractive cDNA library)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3020 contig Csv1_Contig3020:218..356. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNS3 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain CC9311) GN=ndhK PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.191e-14
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+L+GSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   66 TACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGT 105          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNPX (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain WH8102) GN=ndhK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.191e-14
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+L+GSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   60 TACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGT 99          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNPW (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain WH7803) GN=ndhK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.191e-14
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+L+GSRFDFDR+GLVPRSSPRQADL++ AGT
Sbjct:   64 TACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGT 103          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK1_CYAP4 (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.191e-14
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA++IGSRFDFDR+GLVPR SPRQADL++TAGT
Sbjct:   52 TACCFIEFAAMIGSRFDFDRFGLVPRCSPRQADLLITAGT 91          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNJB (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. GN=ndhK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.219e-13
Identity = 32/40 (80.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+++GSRFDFDR+GL+PRSSPR ADLI+TAGT
Sbjct:   49 TACCFIEFAAMLGSRFDFDRFGLLPRSSPRTADLIITAGT 88          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SYNJA (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.219e-13
Identity = 32/40 (80.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA+++GSRFDFDR+GL+PRSSPR ADLI+TAGT
Sbjct:   49 TACCFIEFAAMLGSRFDFDRFGLLPRSSPRTADLIITAGT 88          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_HUPLU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Huperzia lucidula GN=ndhK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.080e-13
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIE ASLIGSR D DRYGLVPRSSPRQADL++TAGT
Sbjct:   62 TSCCFIESASLIGSRSDSDRYGLVPRSSPRQADLVITAGT 101          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK2_CYAP4 (NAD(P)H-quinone oxidoreductase subunit K 2 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhK2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.320e-11
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            T+CCFIEFA++I SRFD +R+G+ PR+SPRQADLI+ AGT
Sbjct:   50 TACCFIEFAAMIASRFDMERFGMFPRASPRQADLIILAGT 89          
The following BLAST results are available for this feature:
BLAST of EH668992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
NDHK_SYNS34.191e-1482.50NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNPX4.191e-1482.50NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNPW4.191e-1482.50NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK1_CYAP44.191e-1482.50NAD(P)H-quinone oxidoreductase subunit K 1 OS=Cyan... [more]
NDHK_SYNJB1.219e-1380.00NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNJA1.219e-1380.00NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_HUPLU2.080e-1387.50NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK2_CYAP43.320e-1170.00NAD(P)H-quinone oxidoreductase subunit K 2 OS=Cyan... [more]

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Properties
Property NameValue
Genbank descriptionapomitic19 Citrus apomitic embryos (subtractive cDNA library) Citrus sinensis cDNA clone apomitic19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH668992 ID=EH668992; Name=EH668992; organism=Citrus sinensis; type=EST; length=139bp
ACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATCGGCTCGCGGTTCGA
TTTTGACCGTTATGGGCTGGTACCAAGATCGAGCCCTAGACAGGCGGACC
TAATTTTAACAGCTGGTACCTGCCCGGGCGGCCGCTCGA
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