EH668992

Overview
NameEH668992
Unique NameEH668992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length139
Libraries
Library NameType
Citrus apomitic embryos (subtractive cDNA library)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3020 contig Csv1_Contig3020:218..356. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_AMBTC (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Amborella trichopoda GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_AGRST (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Agrostis stolonifera GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_AETGR (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema grandiflora GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_AETCO (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema cordifolium GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_ACOCL (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus calamus GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_ACOAM (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus americanus GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PELHO (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Pelargonium hortorum GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.010e-16
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL+LTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLVLTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_ZYGCR (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Zygnema circumcarinatum GN=ndhK PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.625e-16
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGT
Sbjct:   45 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGT 84          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_STAPU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Staurastrum punctulatum GN=ndhK PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.625e-16
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGT
Sbjct:   63 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGT 102          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_PSINU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Psilotum nudum GN=ndhK PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.625e-16
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGT
Sbjct:   45 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGT 84          
The following BLAST results are available for this feature:
BLAST of EH668992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
NDHK_AMBTC1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_AGRST1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_AETGR1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_AETCO1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_ACOCL1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_ACOAM1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_PELHO2.010e-1697.50NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_ZYGCR2.625e-1697.50NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_STAPU2.625e-1697.50NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_PSINU2.625e-1697.50NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionapomitic19 Citrus apomitic embryos (subtractive cDNA library) Citrus sinensis cDNA clone apomitic19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH668992 ID=EH668992; Name=EH668992; organism=Citrus sinensis; type=EST; length=139bp
ACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATCGGCTCGCGGTTCGA
TTTTGACCGTTATGGGCTGGTACCAAGATCGAGCCCTAGACAGGCGGACC
TAATTTTAACAGCTGGTACCTGCCCGGGCGGCCGCTCGA
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